Scaffold Ga0209235

Basic Information
Taxon OID	3300026296 Open in IMG/M
Scaffold ID	Ga0209235_1020367 Open in IMG/M
Source Dataset Name	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_20cm (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0209235_1020367 Open in IMG/M

Source Dataset Name

Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_20cm (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	3551
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

3551

Total Scaffold Genes

6 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

4 (66.67%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (60.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Archaea

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location Name	Angelo Coastal Reserve, California, USA
Coordinates	Lat. (^o)	39.718176	Long. (^o)	-123.652732	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Angelo Coastal Reserve, California, USA

Coordinates

Lat. (^o)

39.718176

Long. (^o)

-123.652732

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014368	Metagenome / Metatranscriptome	263	N
F016387	Metagenome / Metatranscriptome	247	N
F022177	Metagenome / Metatranscriptome	215	Y
F029395	Metagenome	188	Y
F049864	Metagenome / Metatranscriptome	146	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209235_10203671	F014368	N/A	MTELESALKPEVRRSPDTVTRTFRIDRDVDRKMEGLSSEGRVSMNQMANKALRRYVEWEVNAEKFGTVTTSASTIRKFFDYLTIEQAKEMGSWWGENQAPGIITFWFKKFDFDTVLKALEFLGAQYGRAFTSDHAFDGRSHTLIVKHDMGLKASVFYAEAVKAAFSHLGLGTDIFVTDDQVIAISPPDPAHPLNRSYEGAADLKYPTSATSRPIPKLRKGQRTDSETRDS
Ga0209235_10203672	F016387	GAGG	MTLAPTRTMLELKSTPVSSSRSVTRTLRLDEDVEAGIVEMAEREQFSFNLLANRALRKLVEWEDKAGKFGFIQVPTSLVEKVFSILSDEEARELGREAGTNTLPEMILFWFKKFNMENALKAMEMIGSYGNAFRLQYTLDGETDTVVLKHDRGPRVSAFYGEMFQSLFKPMGAKVETRETDGQVVATIIRPLTGPASEHKDALLIPSFAGAKNGRGYKR
Ga0209235_10203674	F029395	N/A	MDAVLSGNGKREGLAYSEVREAKTDGLKDLLVGLIDSSKALDVRVWLDSVYTDIGDEQVRGDWMNDRDVYFKVEGRVDKRNGS
Ga0209235_10203675	F022177	GGCGG	MKDTRDTAIESYKWTAFLKLKGQTSLRNEEEILDEFDGFVQSLQRVGVDYNIIVMVEGRAPRQLHSEYNARATEAKIAREGPGA
Ga0209235_10203676	F049864	GGA	MAKFILSVGDGTFEILASEARRRDVTVQQLLRAVIVPEWVRENAEVNPPSMAPREIAPHLMRQSIYPSQRDQMLQTPVNRLRP

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209235_1020367

Overview

Ecosystem & Geography

Associated Families

Sequences