Scaffold Ga0209235_1008842

Overview

Basic Information

• Taxon OID: 3300026296
• Scaffold ID: Ga0209235_1008842
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_20cm (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5607
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: Angelo Coastal Reserve, California, USA
• Coordinates
  • Lat. (^o): 39.718176
  • Long. (^o): -123.652732

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024084	Metagenome	207	N
F043826	Metagenome	155	Y
F048886	Metagenome	147	Y
F055991	Metagenome	138	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209235_10088421	F055991	N/A	VPVLPEPKPVIDLTHRPFQEFRVATLDELVKQLETAGQGIDVLTIEGVPHLVCGKPLANILVQTDAVKHVPGDLLAIYQYCQGCKTATRVL
Ga0209235_10088422	F043826	GAG	LVRVMGRSWRDTPRFVRIVLLLQAMIIVGLSAWIYNEYVNNQYLQMYLFSLFQGRGSVIAVVGFGGLLGTALIGILLKAGNILGEIEHLSEKVEDRTVVTPTRSGRSTLMPVLQIKQAEPVDEIGRLHRSLLRWNERSKGRQ
Ga0209235_10088423	F024084	N/A	LPTPKKLMELQETINEDLTKASLPEVRIGGFRLPDQALEITFERETVTGENRDRLWEIINAHYKKLLRELELKE
Ga0209235_10088425	F048886	GGA	MVVIGPVLTAAAASSCLLTILSGNVFACANDLPVFIGGGALFVAGIITCLIGVIMPEAQPRPRPSTGSTSAPQTGQVVCKKCGRANTFGLFACPFCGQTAA