Scaffold Ga0209235_1007929

Overview

Basic Information

• Taxon OID: 3300026296
• Scaffold ID: Ga0209235_1007929
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_20cm (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5935
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: Angelo Coastal Reserve, California, USA
• Coordinates
  • Lat. (^o): 39.718176
  • Long. (^o): -123.652732

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008075	Metagenome / Metatranscriptome	339	N
F009595	Metagenome	315	Y
F013400	Metagenome / Metatranscriptome	271	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209235_10079292	F013400	AGGAG	MADVTLLTSMWIIAVIQLILEAGIVLYAYRLTRLTGSFRAWTMIILAFILTTASSVFGIFLLLLNPDLIAGLVQSISLPTLIVSYAVSITTSLLFFFGVFDLVRRFKIAAKKPPGANASA
Ga0209235_10079295	F008075	AGG	MRHSPEFANAFQVSVTEGLANTLGAIVMQTLKNVLAYSFATYAEKPLELHRELSRVFGSGATILERMITKELFQRLDLRYSNEFDFETSVNLARRDMSLSERGNN
Ga0209235_10079296	F009595	GAGG	LRADIIETFQATVVQCFSTTLENLFGRPVKEQMMRILAEHKIPRSEIGARFDDVAKVLTDVFGSSSRLLIYKTVVELYEEYSIRATFGFYDSLRDQILFLRERVVADIIKPRHSPTVDDSIYITGVRQSS