Scaffold Ga0209235_1007298

Overview

Basic Information

• Taxon OID: 3300026296
• Scaffold ID: Ga0209235_1007298
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_20cm (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6193
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: Angelo Coastal Reserve, California, USA
• Coordinates
  • Lat. (^o): 39.718176
  • Long. (^o): -123.652732

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006299	Metagenome / Metatranscriptome	376	Y
F010312	Metagenome	305	N
F014110	Metagenome / Metatranscriptome	265	Y
F075877	Metagenome	118	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209235_10072982	F075877	AGGA	LGIGNGDGFDVLDSREEERVLNRIENRGSFNTLDLAIQLHYSVNDGRQHRVHEDHYIIRLVFQPGRVEVLVHHLKGVRRVEPDELIRLIIQELNVELARDRYGQVELDAVDIT
Ga0209235_10072984	F010312	N/A	MKGLHAYGRFRLEMASPKKELMMLRVFRLTLPAALLVSLTWMTLFTDTARQAVINSLGANANIIIFILGLFLVVGLYWVMGVYERKILYENHRRPAF
Ga0209235_10072986	F014110	AGGA	VDLAKLPGKTGPAVDFLREHVMSVKGRVSAKGTQIQVEGLRHKEVKLLLHKFLRHNGLDDHRVLSQSGILEIVPLHVATRPKHEEATTPPASATMPYLFPGTPTPVSTAKRRKKKA
Ga0209235_10072987	F006299	GAG	LTVSVRVVSKETPEVIEFNQLKSRTREEALKELVNEFGIVYVTALTRQGCSGCETQKPLFKTLAERVGRENPEKVLFRSFHVNSLDGDKHESWNSKRIFGHAAYPTYMIHVKSHVGPLEIYRAVYPPMEELEKQIKESFELADFYKTEAKNASGLMPERL