NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209235_1007209

Scaffold Ga0209235_1007209


Overview

Basic Information
Taxon OID3300026296 Open in IMG/M
Scaffold IDGa0209235_1007209 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_20cm (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6238
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (50.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameAngelo Coastal Reserve, California, USA
CoordinatesLat. (o)39.718176Long. (o)-123.652732Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012334Metagenome281Y
F019106Metagenome231N
F035244Metagenome172N
F097102Metagenome / Metatranscriptome104N

Sequences

Protein IDFamilyRBSSequence
Ga0209235_10072094F012334N/AMPSKRSVELGRDARLFLLFLSEINLVMGALFFVYPSLVIGLWPWTVKALAVRFIGAIFLAIAFGCWSALRAKIWQRAKILVLVGGTFFGITSIVAIVLAVSQGGGYVISTWTGYFLVASMGNFYLLNRYGWPRKPQDRLGASQPWKTARWFFRIQTVIVGIFGIMMLLLPDLAQHEFWPWMVLTPTLQMFAGLFLATCLATAWASLQTDVGRIRVLLPLDVIFPSLALLAVAIHWDVILVESPGTAVTGVWVFIYAFVAVGSAYLYFSSRKTRVM
Ga0209235_10072095F019106AGCAGMASQVPLLTLAKFLVLIGGIVLLVGGILQAIDVRALMDFSTNLARLGSFTGIVVGILVGILALVGSREVANPAWSLILLILGLFVGSLGGILVFIGGLIGLVAHYVKV
Ga0209235_10072096F097102GAGGLEVEVYNCGCKVRIYEVEFGESKNDLTERPSVISDYSPCSKHRNARRIPPEEARLLKVRGEHEAFLNE
Ga0209235_10072098F035244GAGGMSKRSAVNSPRINLISLLAGALALASVFLPWWGMDASGFGSSVFSRWTLWNGPSTDSIFRGSTQPYPTLTSASPIIGALVVISALLALAGSFTSNIRPLIGSFILSVLTPIAYLGVVSYAVANSCGGQSNCLSGPFGTETVFGITLNWGFQIGFYLYLFAGALTLVGLGFHRIFHKTTPARETLQASAGTN

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