NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209235_1003182

Scaffold Ga0209235_1003182


Overview

Basic Information
Taxon OID3300026296 Open in IMG/M
Scaffold IDGa0209235_1003182 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_20cm (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9165
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (25.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameAngelo Coastal Reserve, California, USA
CoordinatesLat. (o)39.718176Long. (o)-123.652732Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005976Metagenome384Y
F014247Metagenome264Y
F014959Metagenome / Metatranscriptome258Y
F024998Metagenome / Metatranscriptome203N

Sequences

Protein IDFamilyRBSSequence
Ga0209235_100318210F005976AGGAGGMLAVSVLLVSSAIVASIFGFALGALNIIIGILTPKAAGITVPDDQPGPLKLSLDKAVIRANIYTVAFSEKKIVLRKLSSAYLTVVTVLILAILGAVLAGPFGIIVGGITAFSIQESVTQRRRDEIKRGNALEASGGSDLEFPYDELEHVQLLGNRIQLYLKDRTVRIAISRRSSRIIGSMLEKIIPAKIQSRPVPSEKDP
Ga0209235_100318211F014247N/AMASARNSRNLIWSGLWIYSVATGLASMIFMAWAFYVETTGRGALFIEPNRVLAAGELATVATGMVALLVLFFRGLSQKEQALTESLRE
Ga0209235_100318212F014959N/AGSLDFDQNGTIVVAGNTVNGNALYGTNGWCGTGNNRVSGTTTGTCIGNVEVDVANTGSIPVKFVQVYMTNFPLAGGLSWQLASGNPTQCGSGQSPTCTLLPIIIPVGDMAEITMGWTAPSGAFPLPWNYIYFIFVSSHQNYVDGYLYFSKGLGMPLQSRLEQRICPPCY
Ga0209235_10031824F024998N/AMFACTKCQKREFQMTQLSEMRLLAECAGCGASFVVDSISEKKSRIEAADPNQHLIWNWKSEQWIPAKRG
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