Scaffold Ga0209235_1002695

Overview

Basic Information

• Taxon OID: 3300026296
• Scaffold ID: Ga0209235_1002695
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_20cm (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9816
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (63.64%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: Angelo Coastal Reserve, California, USA
• Coordinates
  • Lat. (^o): 39.718176
  • Long. (^o): -123.652732

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008075	Metagenome / Metatranscriptome	339	N
F009595	Metagenome	315	Y
F013400	Metagenome / Metatranscriptome	271	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209235_100269510	F009595	GAGG	LRADIIETFQATVVQCFSTTLENLFGRPVKEQMMRILAEHKIPRSEIGARFDDVAKVLTDVFGSSSRLLIYKTVVELYEEYSVRATFGFYDSLRDQILFLRERVLADIIKPRHSPTVDDSIYITGVRQSN
Ga0209235_10026956	F013400	AGGAG	MANATLLTGMWIVAVLQLILEAGIVLYAYRLTRLTGSFRAWTMIILAFILTTASSVFGIFLLLLNPDLIAGLVQSISLPTLIVSYAVSIATSLLFFFGVFDLVRRFKLAAKKPPGANAST
Ga0209235_10026959	F008075	GGA	MFQLSVAQGLANTLGGIVMQTLKNALAYSFATYAEKPLELHRELSRVFGSGATILERMITKELFQRLDLRYSNELDFETSVNLVRRDMSLSERGNN