Scaffold Ga0209235_1002199

Overview

Basic Information

• Taxon OID: 3300026296
• Scaffold ID: Ga0209235_1002199
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_20cm (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10834
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (60.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: Angelo Coastal Reserve, California, USA
• Coordinates
  • Lat. (^o): 39.718176
  • Long. (^o): -123.652732

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005263	Metagenome / Metatranscriptome	406	Y
F030030	Metagenome / Metatranscriptome	186	Y
F042845	Metagenome / Metatranscriptome	157	Y
F046962	Metagenome / Metatranscriptome	150	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209235_100219912	F005263	N/A	LERRTRRTFTIDPDVSEKIDKMVGGHNLEVNVLVNKAIRRYIEWGRYVDSFKLVTSDPRLMKTLWSHVTVGEAREMGTKNGKDTVVEFILYYFRKFDLDSVLKTFEVVGAEYANAYVYSEFGDKENRTIILRHSMGLSASAYYGASFKALCDRLGMKCELEESEDQMTCKISSASVLKTIAPKTLKEQLAKQSIETSRIVGLPAG
Ga0209235_10021997	F030030	N/A	MSIGENAYDILSNEAKNRDVTVQQLLRAVVVPDWIKQNSNGQPIGENDSNLLQPSIYGGESRNSRALISPVARLRH
Ga0209235_10021998	F042845	AGAAGG	MENRKWKAFLRMTGETTVAGEDILTEFKAMVEYLKWIGVDYSMVVQVEAGETDPSRILALEQTPRRREPGQLGD
Ga0209235_10021999	F046962	N/A	LEETANVGYPPETPSQTVPQDTMTDDQLKDLLAELISSSASLNVRVWLDGVYTDIENAGTHREWMKGREVYFKVEGKVDGQNSPEEAVSRRA