Scaffold Ga0209235

Basic Information
Taxon OID	3300026296 Open in IMG/M
Scaffold ID	Ga0209235_1001561 Open in IMG/M
Source Dataset Name	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_20cm (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0209235_1001561 Open in IMG/M

Source Dataset Name

Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_20cm (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	12485
Total Scaffold Genes	17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	13 (76.47%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

12485

Total Scaffold Genes

17 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

13 (76.47%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Archaea

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location Name	Angelo Coastal Reserve, California, USA
Coordinates	Lat. (^o)	39.718176	Long. (^o)	-123.652732	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Angelo Coastal Reserve, California, USA

Coordinates

Lat. (^o)

39.718176

Long. (^o)

-123.652732

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F003305	Metagenome / Metatranscriptome	494	Y
F012334	Metagenome	281	Y
F015579	Metagenome / Metatranscriptome	253	Y
F017278	Metagenome	241	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209235_100156110	F015579	GAG	MPKSSLGLEKMRGQAHLGSDSKKPPRPRHRFSFSGQSKRPEGFSTPREANVTRDDILNSLTKHAHPQEGPDEDVSGIEEVAQLQDPNRTAIPARTRNRGSARGVLVIFLGGFLAVWLYGYVTGAYEIPYLRGVTTSPEVQVGVQLVSSNPILFGAVSASALLGALYLRHRRKN
Ga0209235_100156114	F003305	GGA	LATWEEPRELDTDNEAVISLYDGIKKILEKQPKPKGKPSSGLPREAKHILRCGRILKVDIERKLVVITVMKTDGELHQLRIEANQD
Ga0209235_10015615	F017278	GGCGG	MSEKKNMRDEVRREAKEALEAMRKDLQQLSKDLVVASKTLKTSTEKFVQDTGPKVSAGLEETVETFRRTMTTIDKQTKPQQAKLLRTYKNFLTKQVDYIEKRLNQTE
Ga0209235_10015617	F012334	N/A	LAFAMSSKRPVNLGRYARLFLLFLSEVNLVMGALFFVYPNLVINLWPWLVKPLAVRFIGAIFLAIAFGCWSALRAKIWQRAKILVLVGGTFFGITSIVSIALAATAGGGFVISTWTGYFLVASLGNFFLLYRYRWSRKPQDRLGGGQAWKTARWFFRIQTVVVGVFGIMMLLLPDVAQHQFWPWLVKTPTLQMFASLFLATCLATGWASLQTDLGRIRVLLPLDVIFPSLALLAVWIHWDIISRESPSVPVTGVWVFIYAFVAVGSAYLYFSSRKLW

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209235_1001561

Overview

Ecosystem & Geography

Associated Families

Sequences