Scaffold Ga0209235_1001392

Overview

Basic Information

• Taxon OID: 3300026296
• Scaffold ID: Ga0209235_1001392
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_20cm (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13043
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (85.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: Angelo Coastal Reserve, California, USA
• Coordinates
  • Lat. (^o): 39.718176
  • Long. (^o): -123.652732

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001545	Metagenome / Metatranscriptome	673	Y
F006201	Metagenome / Metatranscriptome	379	Y
F066624	Metagenome / Metatranscriptome	126	Y
F078275	Metagenome	116	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209235_100139212	F066624	AGGAG	MLGHKLISWPGTMPEKQPAEPVKYLASKDYYHRHVLNPEGVDVYVPEGRDAESLPESIKNEIRRQLKGKS
Ga0209235_100139213	F001545	GAG	VVGVWHGTPYQVASVSSTADGVIVACGPAGRLTTYPKGGHRPTKDPSSGTSTWYERQVLADVTLAQPLQVIAFSGAKPPAWAKPYADRPSHDSFTFQAQADGQVRLALVGVKEADDAVIVVTKQAATAPRLFRRYAPNVLLWTV
Ga0209235_10013925	F078275	AGGAG	VAELERHQDRESWVSWAIEFVRRGLWPADVITVHGPHASSADHFWGDAEAWDESGTWSFTVAFQTPARHGWDRRRVRLWDAEHPGTHFPVVRRSAMSHAQRRWLRIARRLAGTQWQPSGR
Ga0209235_10013927	F006201	AGGAGG	MNPEEKVSLTTAFEALGPERVTRGLKATGHRWNDCFLAIATYGEPDALAREMEKSRRKKHVVSALIGVPVQVVNEVVRLWDHNEQSFRALVAEWLELSRAAVPTAPAATAWAQP