NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209235_1001326

Scaffold Ga0209235_1001326


Overview

Basic Information
Taxon OID3300026296 Open in IMG/M
Scaffold IDGa0209235_1001326 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_20cm (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13345
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (57.89%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameAngelo Coastal Reserve, California, USA
CoordinatesLat. (o)39.718176Long. (o)-123.652732Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014368Metagenome / Metatranscriptome263N
F016387Metagenome / Metatranscriptome247N
F022177Metagenome / Metatranscriptome215Y
F029395Metagenome188Y
F049864Metagenome / Metatranscriptome146Y

Sequences

Protein IDFamilyRBSSequence
Ga0209235_10013264F014368N/AMTQIENALKTETRRSPDTVTRTFRIDRDVDRKMEGLSSEGRVSMNQMANKALRRYVEWEVNAEKFGTVTTSASTIRKFFDYLTIEQAKEMGSWWGENQAPGIITFWFKKFDFDSVLKALEFLGAQYGRAFTSDYAFDGRSHTLIVKHDMGLKASVFYAEAVKAAFSHLGLGTDIFVTDDQVIAISPPDPAHPLNRSYEGAADLKYPTSATSRPIPKLRKGQRADPDSRDS
Ga0209235_10013265F016387GGAGMTLAPTRTTLQLKPTLVSSSRSVTRTLRLDEDVEAGIVEMAEREQFSFNLLANRALRKLVEWEDKAGKFGFIQVPTSLVEKVFSILTDEEARELGREAGANTIPEMVLFWFKKFNPENALKALEMIGSYGNAFRLQYTIDGETDTVVLKHDRGPRVSAFYGEMFQSLFKLMEAKVETQETDGQIVATITRPIVSAANGTRDTPLIPSFPGAKNGRNYKR
Ga0209235_10013267F029395N/AMDAMLSSNEKREGLPFSEVREPEAGDRLKGLLVDLIDSSKALDVRVWLDGVYTDIADEQVRGDWMNDRDVYFKVEGRVDKRNGS
Ga0209235_10013268F022177GGCGGMSDTRDRIQENYRWTAYMKLKGQTWARREEEILDEFDGFVQSLRGVGVDYNIIVMVEGGVPRQIRHEYTPRDTEAKIAREGPGA
Ga0209235_10013269F049864GGAGMAKFILSVGDGTFEILESEAKRRDVTVQQLLRAVIVPEWVRENLEVNSSLMAPRASPPSMPTREIAPHLMRESIYPGQRDQLLQTPVNRLRP

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