Scaffold Ga0209235_1001269

Overview

Basic Information

• Taxon OID: 3300026296
• Scaffold ID: Ga0209235_1001269
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_20cm (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13623
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (68.42%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → Euryarchaeota (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: Angelo Coastal Reserve, California, USA
• Coordinates
  • Lat. (^o): 39.718176
  • Long. (^o): -123.652732

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026841	Metagenome	196	N
F032214	Metagenome	180	N
F043318	Metagenome / Metatranscriptome	156	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209235_100126912	F043318	N/A	VAIPQVGQLPEPLRLPHGSVRGAIAVIVTAAYGYVLLQAGSAPTVPTVLVNAVVVVIAFYFGSRAVSTPLAVQPGQPAPTAPHHPRLVRILLFLGFAGLTAWFLTRNPSLQGIPTDLLAVLQVLGGYVLGATASWLVHRRAHESHIRHRLATFFRDIVAVGALGLTAYICFALVTKQGGLLAGRAEQALSLVVTFYFGSRVIGH
Ga0209235_100126914	F032214	N/A	VADLDPGLIAVLVIAAFFLVWYYGAFVYTRRLARRIGTELKRAVVGLGGTSKIQWFGTTAFRMKTEGADPPFQEFSLTVTLRPREMPINWAIGTAQGRRDAALVEASLRKDPRIEFELVDPQTRIGRRRSRSKAGWSNVSLGGSELLLSSDDERSARRILESIDPGTLDPIAALHVTSGKQPGIAASVSVAPGAASRGIAAIRALAERLAV
Ga0209235_10012697	F026841	GGGGG	MERLDRYLISLVLAHFVVNLVHATAHFGLQILPAGLDLVFILGVILIGPIVVLVILRFDPPLAAALLAVLMGASFVYGIVSHFLVPGPDNVTLIGSQTWTVLFVATAFLLGVLELGVLLVAVIAFWAAARTPSEPVARVG