Scaffold Ga0209235

Basic Information
Taxon OID	3300026296 Open in IMG/M
Scaffold ID	Ga0209235_1001201 Open in IMG/M
Source Dataset Name	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_20cm (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0209235_1001201 Open in IMG/M

Source Dataset Name

Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_20cm (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	13868
Total Scaffold Genes	15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	10 (66.67%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

13868

Total Scaffold Genes

15 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

10 (66.67%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (60.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location Name	Angelo Coastal Reserve, California, USA
Coordinates	Lat. (^o)	39.718176	Long. (^o)	-123.652732	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Angelo Coastal Reserve, California, USA

Coordinates

Lat. (^o)

39.718176

Long. (^o)

-123.652732

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005203	Metagenome	408	Y
F010021	Metagenome / Metatranscriptome	309	Y
F027134	Metagenome / Metatranscriptome	195	Y
F032214	Metagenome	180	N
F043318	Metagenome / Metatranscriptome	156	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209235_100120110	F032214	N/A	VVDLDPGLIAVIVVAAFFLVWYYGAFVYTRRLARRIGTELKRAVIGLGGSSKIQWFGTTAFRMRTEGASPPFQEFSITVTLRPREMPINWAIGTAQGRRDAALVEASLRKDPRIEFELVDPQTRIGRRRSRSKAGWSTVSIGGRDFLLSSDDERSARRVLENVDPGTLDPIAALHVTAGQQPGIAASVSVAPGAASRGIAAIRALAERLAG
Ga0209235_100120112	F043318	N/A	VAIPPVGQLPEPLRLPHGSVRGAIAVIVTAAYGYVLLQGGSTPTVPTVLVNAVVVVIAFYFGSRAVSTPSAFVPGQTAPPAPHHPRLVRILLFLGFASLTAWFLTRNPSLQGIPTDLLAVLQVLGGYVLGATASWLVHRRAHESHIRHRLATIFRDIVAVGALGLTAYICFALVTKQGGLLAGRAEQALSLVVTFYFGSRVIGH
Ga0209235_100120113	F027134	GGAGG	MMSIPPYTSIVAELRRTRPTDLDRYARSEFGDRDGGWLADGVRTNLSNRGSSESEDDGRLLRRLTQAISTFFF
Ga0209235_10012014	F010021	GGA	MVTRPPRVQLLGLLPAILKPCGPACAQPFTNRNVEALREEEWQETPAFVIENADRAHRIAEDLFRDFGDRVRIEVVGLDSPRGVWLGLRHQIGKGFAVIVDGREVFRDPKDSDPVKDAVSRALSTRPALA
Ga0209235_10012019	F005203	GAG	MKPETRDHVVAATHFVLGPSNFVVIRLPDNWDLRLGRHPMDVDYTIAYDGVRWAQEGRAAGLLVDAQARRAIELSVRTSRGSIPPPKFDASRPGTCKIGGHSAACTLGSAHFGLLGTKLYHVLHVSYRCDETRRLLDLRFMHRGTAELLEGLLAPLAGTRCH

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209235_1001201

Overview

Ecosystem & Geography

Associated Families

Sequences