NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209235_1001140

Scaffold Ga0209235_1001140


Overview

Basic Information
Taxon OID3300026296 Open in IMG/M
Scaffold IDGa0209235_1001140 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_20cm (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14191
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (75.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameAngelo Coastal Reserve, California, USA
CoordinatesLat. (o)39.718176Long. (o)-123.652732Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005203Metagenome408Y
F026841Metagenome196N
F027134Metagenome / Metatranscriptome195Y
F043318Metagenome / Metatranscriptome156N

Sequences

Protein IDFamilyRBSSequence
Ga0209235_100114010F026841GGGGGMERFDRYLIALVLTHFIVSLVHSTAHFALQIIPAGIDLVFIVGVILIGPLVALAILRFNPPLAAGLLAVLMGASLVYGMVSHFLVAGPDNVAFVGSQTWTVLFVGTAFLLGVLEVSCLLLAIIAFWAAARTPSEPAARAG
Ga0209235_10011402F005203GAGMKPTTRDHVVAATHFVLGPSNFVVIRLPDRWDLRLGRHPMDVDYTVVYDGVRWAQEGRASGLLVDAQARRAIELSLRTARGSIPPPKLDESRPGMCTMGGHSASYVLGSAHFGLLGTKLYQVLHLSYHCDETQRLVDLRFMHRGTAELLEGLLTPLAATRCH
Ga0209235_10011405F043318GGAGVPTVLVNAVVVVIAFYFGSHAVSTPPAVPPGQPAPHHPRLVRILLFLGFAGLTAWFLSRNPSLQGIPPALLAVLEVLGGYVLGATASWLVHRRAHETRVRHRLATIFRDVVAAGALGFTAYICFALVTNQGGVFAGRADQALSLVVTFYFGSRVIGH
Ga0209235_10011406F027134GGAGGMMSLPSYTSIVAGLPRTRTTDLDWYVRVEFGDRESAWLVNGLRSNHSASTSSEPENDGRLRRFTQAITTFLF
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