Scaffold Ga0209235

Basic Information
Taxon OID	3300026296 Open in IMG/M
Scaffold ID	Ga0209235_1001030 Open in IMG/M
Source Dataset Name	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_20cm (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0209235_1001030 Open in IMG/M

Source Dataset Name

Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_20cm (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	14921
Total Scaffold Genes	18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	14 (77.78%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (100.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

14921

Total Scaffold Genes

18 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

14 (77.78%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Archaea

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location Name	Angelo Coastal Reserve, California, USA
Coordinates	Lat. (^o)	39.718176	Long. (^o)	-123.652732	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Angelo Coastal Reserve, California, USA

Coordinates

Lat. (^o)

39.718176

Long. (^o)

-123.652732

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F014723	Metagenome	260	N
F023077	Metagenome	211	N
F048866	Metagenome	147	Y
F071058	Metagenome	122	N
F081165	Metagenome	114	N
F102968	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209235_100103010	F071058	AGGAGG	MTKLSMTTRIGVRRIVIEVNRDLTVEQIEMLDETLKRLGLVKATKVTLHDQQPHRVRPQRASQPSKLPILENNQHNVPSEVKGAQS
Ga0209235_10010302	F048866	GGA	LSPDPVDKPILLSLDGRGFHVLRYSAIPEERMTRLSFELVDPNTGEGASAEAVVDRKLIEDLNSYRSQGSTSKAFLIWIDTVKGEVSWQLRKIPDFDL
Ga0209235_10010304	F023077	GGA	LKKRIPVLAVVMMTAMALLVSPVHPATMNPQENVNLYTGNRLVIDSNQPSIKSVVVRGNLTAATLSNNAYPSKNFTLTTNSTQLYTIDLLLSYQAPYTSEIVISDPSSGSKTQYTSYFVSGGDLNLTIFASFQTAPSTGPSVPLGWSSFYGWVSQFGGAFPFWIKILYAVLGAQFAFVGYRWIKFEDERRRIEGHLPPLDRGNKVYLWTEVVFRTLVAGFAISLAVMIGEVLVLLIAQYLFFVNLDLVSLIDFFSIFFVAALGTLVYLTREGLERIFDLKPIMED
Ga0209235_10010305	F014723	GGA	LAEQYHRLFLRWEVLRGWIPAITFAAICVSLELLFFYNALNTGFVDKTVSIPIGSLALPISIALFLSLGNALVVVTLWMNVFESTAYVKAGPDRQVRRILYPLRMVRTAALVLAPFTIILFAPYIVEANWFVNAAASIQAFKPTTESFYNWAFNVSQIDGATRFIISQMTAALGALIIAGLQLWRVKGTKNLVRAFQRRK
Ga0209235_10010306	F081165	GGA	LATGLASMIFMAWAFYVETTGRGALFIEPNRVLAAGELATVATGMLALFILFLRSLGRSD
Ga0209235_10010307	F102968	GAG	MVTVVLAFVLAVVGLAFLFIVGALMGGITGFSLQEFLTQRMRNKIGSEMELTSVGKSDIEIEYDDILEVRLVKSRLYLIAGNKSLSASFPRGYSRKMEPVLENIFESRFTTEESVRAAETAEKENEKSQHSRGDRGKFPRR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209235_1001030

Overview

Ecosystem & Geography

Associated Families

Sequences