NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209235_1000842

Scaffold Ga0209235_1000842


Overview

Basic Information
Taxon OID3300026296 Open in IMG/M
Scaffold IDGa0209235_1000842 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_20cm (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16211
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (41.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameAngelo Coastal Reserve, California, USA
CoordinatesLat. (o)39.718176Long. (o)-123.652732Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013998Metagenome / Metatranscriptome266N
F016384Metagenome / Metatranscriptome247N
F019978Metagenome226N
F055614Metagenome138Y

Sequences

Protein IDFamilyRBSSequence
Ga0209235_100084211F016384N/AVLWEHFAYFPPRSTLKGWRSLPAQDPLVSPVDVGVLHQVNMSLTRNLDFCQSGEGSKAWSEVLGLREDFKSHLAWVMGLGHLSETFSRHAVPNYLVRVLHPLSQSLRVNLLLGMLPDCFLEVRALTEQLARAFQADLKFSKEASFTSKLSRLDVREPSLYKLTGETDTSVLPLLSELGHGWVRMDQPLTGMGASLPVSAASTMYTSRDVPELLRLTSAVKRFRELLSKTMSQWSSKLEKKDSPPSTKGS
Ga0209235_10008424F055614N/AVSSVDDVSFEDRFSDQARKKALEMFEHQPQPAAEEFDFGELFTRILWEKDWTDKVESVVVKIRNRFHIGNTDTRLSNELKRLIPDMKEVAKAYDEMTTGYREFIQTVLDAKQSRSSQTGKNIESGKNAKLPKHPVHLK
Ga0209235_10008425F019978AGGMSEKKRVPPWERAQLNFTLAERRRLRKVEENERPGKTRLLDLEENRKRLAEIRKHFCPDCQRYIRSDQLAKEEWKIGEEQGFCKCAKNNPKT
Ga0209235_10008426F013998GGAMRLKIPLKMHRLLSLLAFVLALIGGVLVVVSALGGLGHPSISSLAINGLVFLFGLDAILGGWMIYTGIRKLGGIMTLFAGIILFVLTGGAGTSVLLVLAAGVLGLVAAELKPWWAFWR

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