NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209235_1000594

Scaffold Ga0209235_1000594


Overview

Basic Information
Taxon OID3300026296 Open in IMG/M
Scaffold IDGa0209235_1000594 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_20cm (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)18492
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (70.83%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameAngelo Coastal Reserve, California, USA
CoordinatesLat. (o)39.718176Long. (o)-123.652732Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001816Metagenome / Metatranscriptome630N
F004426Metagenome438N
F013876Metagenome267Y
F014601Metagenome / Metatranscriptome261Y
F028763Metagenome190N

Sequences

Protein IDFamilyRBSSequence
Ga0209235_100059413F028763AGGAGMSEPARSKGRIALGVFAIIMGCVSLVGLSSTSYYFGLGIFGGAYGAVMIALGVALIAKKEAVY
Ga0209235_100059414F014601AGGAGGMSGSTGEGQRPSPVPRAVLAGLIAGMAAGLVSYYVINSVLGLIIGFIAGAIVGSRTVLLMNRAREQDK
Ga0209235_10005942F001816N/ALPLSPDTKKEAEKRLTVLKMIELFADKCAKSTLLNGPFGGDDRAFDRLLGPAGILTRTSLVRATTDGRVTYYGRTEAGKIYQQVLDTELNFLDPYTGGEVWKK
Ga0209235_10005943F013876GAGMSSIDDPILKELLTALKEDTQLMASDLLSVITTQALIAVFALFLAIASLARIILFEQSPFRMGGPGPVPGLFETALTFVLFAMSVVSIYNLLRLHERYARLQALAEKLGR
Ga0209235_10005947F004426GAGLATRRRAHPGRTVHSMVDEELRVSTHKSIIKTLGRQYTDAAQFFVELVVNSWMWGEATKVEIRVPESGSAIEYEEWGNGMDLTGLREFLTKGKLTDEGFSPKYKRPIRESYGMGSLAWLTVGKDLELQVHKGRFDRTITLTENLIDKHWDATDQSTWRPLRLIQAPLDHDGLRIRIRSLTKKPDPVDVRRALLARANVLTLRGYGPFEVSVNGEQVKPEELRGSTLLPVSIATEYGKITGEIMIMPISKVRAGISEAGISVQQKHITCLQHQFFGLDQYRTHGLSRIQGWVNADFLRRLPGGNEFEHDSAQWRVFEKAMRGFVRNKVYKFLRQTASRRELRSIQYLNREIAERLRRSLRRNVQILSKAMLNPRVTPKINIVPGKTRKEIVLGEKKHRRGKRHSREATRSIIHLKDQILAFDVAHGGDRGQAYVETDKSGIRTVYVNMDHPMWYVEAGMTPTKLRYCIRQILERSIAEEILPVSPSTPEETFSTLDALYNDALA

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