Scaffold Ga0209235_1000528

Overview

Basic Information

• Taxon OID: 3300026296
• Scaffold ID: Ga0209235_1000528
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_20cm (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 19530
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (73.08%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: Angelo Coastal Reserve, California, USA
• Coordinates
  • Lat. (^o): 39.718176
  • Long. (^o): -123.652732

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001093	Metagenome / Metatranscriptome	780	Y
F006078	Metagenome	382	Y
F007215	Metagenome / Metatranscriptome	355	Y
F009323	Metagenome / Metatranscriptome	319	Y
F013994	Metagenome / Metatranscriptome	266	N
F016382	Metagenome / Metatranscriptome	247	Y
F024995	Metagenome / Metatranscriptome	203	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209235_100052814	F007215	AGG	MRRKHIAILVIGVIVIVGVVWYQSLPRQQNGWTTYSVEYVLTKNGNHTQIQASYNNGAVNTEQVYWLNFDNRTAVYNYFRCTPSMTGCTADGCPFTVLNDSVSEYRVKIVCKAGV
Ga0209235_100052815	F001093	N/A	MASDTKNRESWDEQESSARSISQSIPLKLSRVFRFNDPQTGAPQISDFPDTNPTGDTPLEIRMKHFTEIENFTFLAHVLGHELGGTTPRPIRTVTDLQVPDEEFQNFVNTAKTASVTDEELADSTLDVGINWEHFVASNDNLLLPDHPLKISDVLMQEKIDSLDVITEAFVREINLRGIEKQTGTKPRK
Ga0209235_100052822	F006078	GAG	MARYMQARKTTVGAVTLLEPEVKVASQSVFYALRTRDGTCASGCGVSQTRVAEIVFGVEIVEWDLCSACLSRTGFLEYFNSLPSATPREAEEIKILLGISNERFETGARTHATIVGDTTAEANSGR
Ga0209235_100052823	F013994	N/A	MQPVQPYYQYQYPQNAWEVARTNKINNSLTGLLLLVIGVLISWIPFAGAIGGIVGFIGAILVLVGREPFGEGHVRNTTLALILFIVGITVTIFGFFYALVYGVSSAITGGSSSSILTLFSIIFVIGGAIFGLSEVLLTYSLQKGPGRTLLWTAYAISIALSLVNLFILPFSSGGFWTIYFGTGVFLFTGFLAAIPAAIYGTAFYLARERIVKHEIPPPLTQPSTGKPPW
Ga0209235_10005283	F016382	AGGAGG	LRSSLVDIFYESLGYCFGRVLVETLGPTVQASVYDLLGRSGIKREEISNRFDDVVQALTKTLGASSRVIVHRTVVEMFKEYSQRLDFSYTDSLRDRLALLKETVVANHVLPHRLRDETTFDTVEKPSWIDAPKGQAYGSLYPMKKGVKT
Ga0209235_10005284	F024995	AGGA	MASRVRESGWNNSLDNFESVSKSLSPDQRFAAEKEFSVVLVSTVREAVGNALGRNVLEILTSKGLLDDASNSKEFDRKLELLFGNGAAVLERIVVKDLNRKLGIRYDSEASFDYEKSLETARETCFMESRLK
Ga0209235_10005287	F009323	AGTAGG	MVDVVVISTLYFISVFQLILQAGVVFYAYRVTKLTGSFRAWTLIIAAFTLLTIRNVVSLVLSLSLPADQLTALINSVGEVTLILSSAVNIAAGVALFLGMFGLVKRFENQSKGPQ