Scaffold Ga0209235_1000460

Overview

Basic Information

• Taxon OID: 3300026296
• Scaffold ID: Ga0209235_1000460
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_20cm (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 20341
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (65.22%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: Angelo Coastal Reserve, California, USA
• Coordinates
  • Lat. (^o): 39.718176
  • Long. (^o): -123.652732

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006299	Metagenome / Metatranscriptome	376	Y
F010312	Metagenome	305	N
F011833	Metagenome	286	Y
F016379	Metagenome	247	Y
F031429	Metagenome	182	Y
F075877	Metagenome	118	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209235_100046010	F031429	N/A	MSLLRPTPRRAGELSEHSHPRPSRQDASEDAEPPLAGPGFLRLNSMAYRLEMLLITIILLVVLFYWRLFLVKDLNLLETVFWIIFPDLVSFIPIGLAARGAKEWPRWGPRLYNFFHTLLVWIPVFALWSVLSGTFQWPLLGWAGHITADRSVGYYLRAASKKGAD
Ga0209235_100046017	F006299	GGGGG	MTVSAEVVSREVPEVVEFNQLKSRTTAEALTELVTDFGIVYVTALTREGCSGCETQKPLFKTLAEKMNRENPANIRFRSFHVNYENGDKQESWNSKRIFGHAAYPTYTIHVKSHVGPLEIYRSVYPPMEELEKQIEESFELAEFYKTEAQNASGLGSDKL
Ga0209235_100046020	F010312	N/A	MKGLHHYGRFRLEMASPKKELMMLRAFRLTLPAALLVSLTWMTLFTDSARQAVINSLGANANVIIFILGLFLVIGLYWVMGVYERKILYENHHTRPAF
Ga0209235_100046023	F075877	GAG	MEITLADRDGYLDGQLVFRLGIGNGDSFDTLDSKEEERVLNRIENRGPFNTLDLAFQLHYAIDDGRRHRVHEDHYVLRLVFQPGRVEVLVHHLKGVRRVEPDELVRLIVEELNVELTRNRYGEIELEAVDIT
Ga0209235_10004604	F016379	N/A	MVIAILLGGFSSEYLSNVYFRIWVDNNFPQLSMLLTGQVDALLIGVALGGTILLIQRMKNEARMAGETASTFGRPSSLTQNSELLPNHATPTTIVEATWETPEQVLGELEKHDF
Ga0209235_10004605	F011833	AGGAGG	MKAFIASFVKGQVLLLAPQPVLLMLIIFNKVSLYYSAPVIVSLTVLWGWFDYSGKAQRRGASVLRKLERLVDDFGWLNFQEGGGAGNEMVVTLLDKASFGSSTLTTPQLATATTEKIKEVYFTLELWYFSMRQKVRLLLRKAASMIEYDLLEVVNEFIEFYGEFVEKVAEETLRLVAKGDLSSLEGEREGFSTFKTRLSELRGRANAFLQGLRDEGLPVSETKVRALEVDPWFKTGTEISETKESTS