Scaffold Ga0209235_1000437

Overview

Basic Information

• Taxon OID: 3300026296
• Scaffold ID: Ga0209235_1000437
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_20cm (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 20704
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (65.22%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: Angelo Coastal Reserve, California, USA
• Coordinates
  • Lat. (^o): 39.718176
  • Long. (^o): -123.652732

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001571	Metagenome / Metatranscriptome	669	Y
F011479	Metagenome / Metatranscriptome	290	Y
F017116	Metagenome	242	Y
F020766	Metagenome / Metatranscriptome	222	Y
F034511	Metagenome	174	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209235_10004371	F011479	AGG	MSAVSFDDLVSQSVSETMSKILGATTWKSVNFFFDTKTAAREPEAFAALLEKVFGLTSKVLQKKIAETLLNKVGAVQPSNATDFRQILRLAKAKFPRTTVPGQIGS
Ga0209235_10004372	F017116	GGA	MASDPIITMFETFNLVLILVAFAIFARLAFKGKSLGSFRFQLSIFLLIWVVSEIPHIAETIGFLAATGYEDMGLYLHAASMAVFATFVGWRSLRFLSYHPPAPITTVSLPTETPKVLKS
Ga0209235_10004373	F020766	AGG	MDLATGGMVLFTIMVAAGIIPLIMAIKVKVHSLRILSLLLGLFAVVHGFYHLAFGFQQELLADAVFEPISLILLIGLGAYYSKVGIA
Ga0209235_10004374	F001571	GAG	MTGSVPEKRLALIHRVIVPDKEYPKEYAVLVTDSRSIFIRLEKTRSSYWLRGEMKFGTALMTDVIPKTLEDYEQTSVESLIADNANLTIPHEKVTSLVLRKEEPEFRAREFFVWLTMRRQGHRFQVYDFEMGYRQSSNDETTLKFYMVPLGAYFKPRRQTQTRQTILREYATDALGIFQKVLREKSYLHKTIHGTVQFVPSNRENGIAGRSLE
Ga0209235_10004375	F034511	AGCAG	LSTSVKKRRRPAQKGVQAVFTPSTNWKGRAQLSLGLLAIGAGTGSWIYTTRALGGFGLGNLIPWNESAAAIFLPVSIPLLIGGVGLCTYFLAMRRTWRASNRIESALYELEALVGQKNGVAGTPLGGGVIPEAKKGGKRSFHLPSFNVGSKALAIALVEAVLLIIIYGGLVREYASNVNMQNWVQANFAPGSYLLNYNAVLVLAGLLGILIFQLVPRKLHSRKLQG