Scaffold Ga0209235_1000387

Overview

Basic Information

• Taxon OID: 3300026296
• Scaffold ID: Ga0209235_1000387
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_20cm (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 21813
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (78.57%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Archaea → Euryarchaeota (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: Angelo Coastal Reserve, California, USA
• Coordinates
  • Lat. (^o): 39.718176
  • Long. (^o): -123.652732

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007105	Metagenome	357	Y
F011212	Metagenome / Metatranscriptome	293	N
F036622	Metagenome	169	Y
F039063	Metagenome	164	N
F039548	Metagenome / Metatranscriptome	163	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209235_100038712	F039548	GGGGG	MFQRPSSATAGLPPGIEPRRRLPYLAVGLLLAFAALLGTLLYYAQFSGGVRWLLGVVTLAVLAAIVWSQIQRRTAEPSPLVGPPSPDATRGGELGSFAAAVRRADRGLPYSQMIVASRAQAAFLERARLALGLPSATLRDMRRDPGALRRIFGDDALVDFLFLEENDPDDRFAWVRRARARGGFVREFRDILTRMEAWR
Ga0209235_100038718	F036622	N/A	MLAKVRRWGNGLALRVHKRDLESVGVAEGDVVQVELIRSSKRGQLDLKSLPTFEDADKRASERHDRYLYG
Ga0209235_100038725	F011212	AGGAGG	MRIRPLGLVAITIALAGIAVAAVAFGPANLAKLGAPSGTNTPQASSVGVPTWHVGDSWTYNVNSTPPDVFIAGPTWGSPSLTGTLTRTVASASGSEYNVTVHGSFHLGSVFDPVRDGNETNSSTLLLFRPVMENATVDGYAVYRASDLAELKEVRTVQLKSALWTARGWFNVSYSATVQTTYQPALDIWAFPIEENETWNVSSNATIHAMIAWRFDAPNDSFGFWHSFNVTVPIRLMLHSGELENVTTPAGTFSSIPVRVALPTIDRLATDDREGPVVGLGGDECGQPRLAAEAWFSGDVGNVVKAVSFIGGMKIVAELASFHRA
Ga0209235_10003874	F039063	GGAGG	LSDGLSPEKIAETLAEIDDFVRSSAAKTWTVPTDLLGSRLNGGSRKRCPMCRAHLILREPRIYRRLLIPGGPIVDLNGSARSRQARLIGIGIEISYVDALRNLTEEDVVYFDRIDFLHRLFG
Ga0209235_10003878	F007105	AGGTGG	MRILRRRASEKAEGAALNAHTRRSTERQAEIEALQFLLTSIKKRHTWDRIKCAIATVIPAFWILLIALRPYLPTWLHPLLQDVPAIWTIAVSLAIAGFQWRNLLDYQRRVIPLVQEMYERALAKRDRELLTILGNVLRISKVREFFRSLRSPSR