Scaffold Ga0209235_1000310

Overview

Basic Information

• Taxon OID: 3300026296
• Scaffold ID: Ga0209235_1000310
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_20cm (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 23782
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (59.26%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → Euryarchaeota (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: Angelo Coastal Reserve, California, USA
• Coordinates
  • Lat. (^o): 39.718176
  • Long. (^o): -123.652732

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015322	Metagenome / Metatranscriptome	255	Y
F019979	Metagenome	226	Y
F021072	Metagenome	220	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209235_100031021	F021072	N/A	MGGERYTPGLAFILAGLAILFVTGAFEAEIVLTSGLGTSSYLGATDLVRLSTVPWGLGLLFFGYALDHPEVLWDRVRGRRILATFLLFADGAIHLVAIGEHVESVVVGFFLVLAPLEFIGGFTILRASRPIVWGWFLGSLVLIGLYIASRLTVLPFVSQEYVFGPLGLISKAIEGVLAFALAQELWITSTTRRPRTARPTTQS
Ga0209235_10003104	F015322	GAGG	VPLTDSACVLLKVTKRFPASLPDVYAWCTEFRDNDPELSRVRLRTRKVIRREGDLIEMEETGIMGFPFVSRSLVRLRPPDTWVADGRSNMGHTHNTYRLFSETEGTRLEMTFDVHLRGPYRLFAPFARRFTVRRISREWDDYVRAMQSGR
Ga0209235_10003108	F019979	GAGG	MEISPPSPSRRTLRRVSIVLGIVGGALDLGVGLLILATGPMASSAAMGITVAYVGAILLLLLGGVILGSTVQMIGSRKTPRRRSEGLLMFVYGVLMLMVGAAMIGRLFPTMQAPEVSGAAMIGVGLAMLYIGTTMRRVQMSFR