Scaffold Ga0209235_1000274

Overview

Basic Information

• Taxon OID: 3300026296
• Scaffold ID: Ga0209235_1000274
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_20cm (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 25179
• Total Scaffold Genes: 32
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 26 (81.25%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: Angelo Coastal Reserve, California, USA
• Coordinates
  • Lat. (^o): 39.718176
  • Long. (^o): -123.652732

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001047	Metagenome / Metatranscriptome	793	Y
F004426	Metagenome	438	N
F013876	Metagenome	267	Y
F014601	Metagenome / Metatranscriptome	261	Y
F025249	Metagenome	202	Y
F028763	Metagenome	190	N
F059803	Metagenome	133	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209235_100027421	F014601	AGGAG	MTGSKDDSRRPSPIPRAVLAGLIAGIAAGIVSFYVVGPVGLIIGFIAGAIVGSRTVLLTNKAREQDQ
Ga0209235_100027422	F028763	AGGAG	MSEPARSKRRIALGVFAIIMGCVSLVGLSSTSYYFGLGIFGGAYGAVMIALGVALIAKKETVTG
Ga0209235_100027423	F025249	GAG	MRSLCSRFNALPAENKDPSAESDTHSPPPSVFGIIVVGLLAGLVVGLLAGPNFTLQGFFLGFAGGALITAGLYFYTAGRSRPAR
Ga0209235_100027428	F004426	GAG	LASRRRAHPARSVHSMVDDELRVSTHKSIIKTLGRQYTDAAQFFVELVVNSWMWGEATKVEIMIPESGSTIEYEEWGNGMDLSGLREFLTKGKLTDEGFSSKYKRPIRESYGMGSLAWLTVGKDLELQVHKGRFDRTITLTENLIDKHWDATDQSTWRPLRLIQAPLDHDGLRIRIRSLTKKPDPVDVRRALLARANVLALRGYGPFEVSVNGEQVKPEELRGSTLLPVSIATEYGRITGEIMIMPISKVRAGISEAGISVQQKHITCLQHQFFGLDQYRTHGLSRIQGWVNADFLRRLPGGNEFEHDSAQWRVFEKAMRGFVRNRVYKFLRQTASRRELRSIQYLNREIAERLRRSLRRNVQILSKAMLTPRVTPKINVVPGKTRKEIVLGERKHRKGKRHSREVTRSIIHLKDQILAFDVAHGGDRGQAYVETDKSGVRTVYVNMDHPMWYVEAGMNPTKLRYCIRQILERSIAEEILPVSPSTPEETFSTLDALYNDALA
Ga0209235_100027432	F013876	AGGAG	MSSIDDPILKELLAALKEDTQRMAADLLSIITTNALIAVFALFLAVASLVRIILFPPRFGPGPVPGLFETALTFVLFALSVISIYNLLRLRERYARLQALAEKLGR
Ga0209235_10002744	F059803	AGGA	LMGTEMQTIRTHMNTNLRRRALLLAVLEFIVGGIVLLGGAALVYFSIDASGKTLGIVHVFLGLMAFPAGYLLLMGKARARVLTLGVDVAIIAFSTVSEVILSTTGSLASGPFTDSIIGTTVAVLIAVAIAYAVMRDRSQTLAGRPSSVR
Ga0209235_10002745	F001047	N/A	MRVIRFLMRETMFDESYNIREVLDDVIERVTLREKLIQTAKGFAEKKKEERYTLAIRQFENLMTDFLRLYQPILERLRSYREGLQKELSTLKSSLATVNGMLEVSKGIEGLAARLQRLESDGQELDETIKEKSKIGDKIDDLFNRIRTHNPGIPGPGRDSFADVMSGMPKDLFPEEPTREAPSAKKASTRG