Scaffold Ga0209235_1000249

Overview

Basic Information

• Taxon OID: 3300026296
• Scaffold ID: Ga0209235_1000249
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_20cm (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 26458
• Total Scaffold Genes: 39
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 29 (74.36%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: Angelo Coastal Reserve, California, USA
• Coordinates
  • Lat. (^o): 39.718176
  • Long. (^o): -123.652732

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009950	Metagenome	310	Y
F010757	Metagenome	299	Y
F012651	Metagenome	278	Y
F034133	Metagenome	175	Y
F036171	Metagenome	170	N
F063557	Metagenome / Metatranscriptome	129	N
F093626	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209235_100024910	F063557	GAG	LVEQLQAQEVLLDLTIAPFEPLTPGNGQSTGEKKEKLANAIKERIPEESLERLRRQLAGRLVGVTVVFLLWKGSPSVSNTRPVKDLDNLLKIVFDVLRHGPQGIGIIEEDSYIGEVYATKQLVSREEDEGYRIIMEEHHDPQMLRTLKQYYSKIPA
Ga0209235_100024916	F012651	GAG	LAATGRFGWFLIGVIIGAIILEIFNATVRFVPRWLGAATAIIGFLIHLVAWFGLMLAVVGTLGSRVIRKDQMNYALIGFGAIIVTLELWLSIAFG
Ga0209235_100024926	F010757	AGGAG	MSSVSQIRIRARLAKPPEHVLVKFPRYEREFFLGYANFILGLILSPDIRELLSNLVASEGIRSDRSIDLRVMIFPAKQLRRQPSRILYGSYSHSLAQISLYPLRISKDRIRREGTAMFATHLNHLSIAQRKLIGEISTAAISTLIHEVLHVKFQQRSLARYVEEGMVQRLEKTYMKQWADKVDGVLRSQFSSVIENVLWEKSSRTVKHKLTRLRSREYASRND
Ga0209235_10002493	F009950	GAGG	MKITMKANGKRLKPWKAAETIFHVEETVRAEHLELLQKAHLVPQSERKKHDGKDIFEPGEVFYMTMETEKGPIKVAYVHWRPTVNCGEHYRFLNPDGTLGERMTSAIKVGKEFQP
Ga0209235_100024931	F034133	N/A	MLCAECLRDLQDVVKAHDSNLYLCGLCYEKERVHWRILLSSDVEEQALLARILRVIEWADQSRPKDYGRPKQS
Ga0209235_100024933	F036171	GAG	MDKFSTIRSIKLSYKIDQVENGWTVTTMDGTVFVFPDAREMAEWFCMVVGVPFLYRKAELDPLEEEIRKLTKATASLLA
Ga0209235_100024936	F093626	GAG	MLAQMRARTDFSVPASYLLLPLASYLSWALFMVAWWGAGAGLGTGDLTLAVSELGIVGLVASAAASYVVYLVMSRANNHSSRTRALLWKAVGELQSRTGATGQEAMLPLSSAEEGLYRLSRGEHERSAVLWALLASIPVVGWIFLVTALWFLSRELAKHARLEELVLEDVDRTLKATGLQGASVRGAPVASRDILGVSVAIVSTIELLSSFLLGPAGGLVLIYLTVGAFSLVWLDLAIRDPTVHFSFHSQFEPDILRSLPDTFAGISNVGAG