Scaffold Ga0209235_1000193

Overview

Basic Information

• Taxon OID: 3300026296
• Scaffold ID: Ga0209235_1000193
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_20cm (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 28995
• Total Scaffold Genes: 36
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (55.56%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: Angelo Coastal Reserve, California, USA
• Coordinates
  • Lat. (^o): 39.718176
  • Long. (^o): -123.652732

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011480	Metagenome	290	Y
F016793	Metagenome / Metatranscriptome	244	Y
F020149	Metagenome	225	N
F024084	Metagenome	207	N
F031443	Metagenome	182	N
F063566	Metagenome	129	Y
F074651	Metagenome / Metatranscriptome	119	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209235_100019311	F074651	N/A	MPVSRTRGTKDSVKFMQVLDRAVYLRLKQLAHQRGVTVQELIRVLLIPDWLHGAEEKRLRVELESRHRRATQKRLFRTSLQKPLVSARKN
Ga0209235_100019313	F011480	GAG	MQLQFDQKVDSAITRSVRATLRFYNELRKQAAARGEPGRPPSFETFSTMAAGLMDASKQVDLDRLKNLSMRELFERTWAQKLLNYSTKRSLKDAYETLTKRF
Ga0209235_100019316	F020149	N/A	VFLASASGVLPRNTQVGLLTLALSATLSIVISLVGIPIGFTYMYFFGGVVSTKAIKLYLFITKGTHVIESKTSELSALQASRGLKLKLRRQIMYFVFILAVVVPFASYEAKHKDIPFFSPLARTTDIVSLITQDFVTLTMTASLMLPLVALALPYLGGLRLRSIDVGPFHTTVLSMVIGASGGFSLLYTALTRPVLSVLAYVFLLLIGVCWCFAIGCNLGADPANRHIAHIVLAEKVSSRVVSSKIWLENPPGKFREV
Ga0209235_100019319	F024084	AGGA	MQLQDKINEDLLKASLPEIRIDGFRLPDQALEITFERETVTGENRDRLWEIINGHYKKLLRDLELKE
Ga0209235_100019320	F063566	GAGG	VVRVIGRSWSSIPGFARIILVIQAIAIAVLSGWLYNEYVNNQYLQVYMLSLFQGRGSFLAVIGFGGLVGTALVGILLKAGNILGEIEHLSEKVGNGTDTNTATVSRSAQMPVLKVANREPRSEIGQLHGSLRRWKERSD
Ga0209235_100019331	F031443	N/A	MSDTKASKDWAPFSKQIKLDESDWAVVDALFEEHRNREGVISKADFIRKLLLTGARSQLLYLHQHSPASLTRVARTSGTN
Ga0209235_10001936	F016793	N/A	MTSKARKNKPTRIEKVLPLEKIIEFLRQRFHDPYLNPEAEVSFADFLAAFPEIPREDLEEGLSHWVMRPGAKVLSTKTTDLDGYELQVWYVHGLHEEHAELEDSFSRGALQA