Scaffold Ga0209235_1000184

Overview

Basic Information

• Taxon OID: 3300026296
• Scaffold ID: Ga0209235_1000184
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_20cm (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 29510
• Total Scaffold Genes: 30
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (43.33%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: Angelo Coastal Reserve, California, USA
• Coordinates
  • Lat. (^o): 39.718176
  • Long. (^o): -123.652732

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013998	Metagenome / Metatranscriptome	266	N
F014491	Metagenome / Metatranscriptome	262	N
F016384	Metagenome / Metatranscriptome	247	N
F016650	Metagenome	245	Y
F019978	Metagenome	226	N
F040025	Metagenome	162	N
F091656	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209235_100018412	F016384	N/A	MGLGHLSETFSRHAVPNYLVRVLHPLSQSLRVNLLLGMLPDCFLEVRALTEQLARAFQADLKFSKESSFTSKLSRLDVREPSLYKLTGETDTSVLPLLSELGHGWVRMDQPLTGMGASLPVSAASTTYSPRDVPELLRLTSAVKRFRELLSKTMNQWSAKLDRKDSSSASKGS
Ga0209235_100018416	F014491	N/A	MILLILASLAMFGTIAYIITLQDVTNSAISYITGLLISVTGILLGLSGLTPASKSLERMKLQVTLTITTLLWLVAVVMIAQTAGPFAFATSTAYLRYLFLVGIALFTVLVVMYSTSTIEATRQRLMAEQAAKSSQPGRTTG
Ga0209235_100018417	F013998	GAGG	MPLKMHKLLSLIAFILALIGGLLVVVSALGGLERLSIGSLAINGLVFLFGLGAILGGWLIYTGIRKLGGIMTLFAGIILFVLTRGAGTSVILVIVAGVLGLVAAEMKPWWAFWR
Ga0209235_100018422	F019978	GGA	MSEKKRVPPWERAQLSFTLAERRRLRKVEENERPGKARLLDLEENRKRLAEIRKHFCSDCQRYIGSGQLTREEEKIGEEQGFCRCAKNVLKP
Ga0209235_100018423	F040025	N/A	VSSEDYESPEQLLLSDPVRRKALELFEHEQEATGEEYDFEELFVRILWERDWTDKLASVIGKIRNRFHLRNTDTKLSLGLSALIPDMNEVAKAYEEMTSGYKEFIRTVLQAKIAGKETNKKTPPIILKNRFDPTK
Ga0209235_100018427	F016650	N/A	MSNMASQGTVAGTEAGKLQTELRDVFSKILSHARSIDMTLALGDATEALGQVRELEAYLERGLVVLSKPLTHES
Ga0209235_100018430	F091656	GGCGG	VNDEIERIERFKSFLRIEDKEIFDDLLRQCKHYAPYASTMASVVKEVPLMFSMLFGQHKMIWELEKRLAKLEANQTRQSSVERSNSGLETYPTYD