Scaffold Ga0209235

Basic Information
Taxon OID	3300026296 Open in IMG/M
Scaffold ID	Ga0209235_1000140 Open in IMG/M
Source Dataset Name	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_20cm (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0209235_1000140 Open in IMG/M

Source Dataset Name

Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_20cm (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	33117
Total Scaffold Genes	41 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	31 (75.61%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

33117

Total Scaffold Genes

41 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

31 (75.61%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (66.67%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Archaea

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location Name	Angelo Coastal Reserve, California, USA
Coordinates	Lat. (^o)	39.718176	Long. (^o)	-123.652732	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Angelo Coastal Reserve, California, USA

Coordinates

Lat. (^o)

39.718176

Long. (^o)

-123.652732

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F001816	Metagenome / Metatranscriptome	630	N
F009061	Metagenome	323	Y
F016133	Metagenome	249	Y
F022171	Metagenome	215	N
F044399	Metagenome	154	N
F058040	Metagenome	135	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0209235_100014011	F058040	GGA	MVQDKILCFICSVKGIETTFATYYELQDHLYKGHDMTKDPAMEIFTKQKSLASKAAPTK
Ga0209235_100014013	F016133	GAG	VVSRLPKFMQTLDDLIYRELEKIAKRRGITIQELIRAVIVPEWINGLNGASNKLNDWR
Ga0209235_100014025	F001816	AGAAG	VPLSPETRKEAEKRLTVLKMIEVFADKCPKSTLLNGPFGGDDKAFDRLLGPSGILTRTSLVLASTDGRVTHYSRTDAGKVYQQVLDMQLNFLDPYTGGEVWKK
Ga0209235_100014026	F022171	GAGG	VSSIEDPLLKEVLAAFKEDAARMADDLLRTITTQALIAAFALLLAISSLLRLLFFVYFQPGGFGFPMRPALDTSAVVETALTVVLFLLSVVSIYSLLGLRRRYSRLLAMAEKLGR
Ga0209235_100014034	F044399	N/A	LWRLTPRNILRGILLAFFPWGPAYLFERADFWFGQTGNGYWYYQFSGTRLEADVVSFALGGILIAYLLRPRWAVVQVFLSAGLVYSLLYFACPTYPVGPVWKSECYSLGPDGLAGVRLCAMMFSFGVLPAIVRASYKEDKLNKQLRPWIAIFGAFVTSVVTAWFPLTAWFSGATYLTSLVPFQAALLFGVSEIAAGILAARISRSIVVAAASGVTSILIISGFLWPILCAGCDRSLLFLIVPSWGIFALIGGFLELGLPKRLSIGPLEHFYPRLEDIRRIGVAVVLLFSLWTLISFDFWDPNVLYATNMSPGPGQMTLGTPSYPYVAGYYNSIKYRVCCVEVGVSFQRVDLNALAPNNFLMAGMGVQSPNCCIDGWDFGWRADVFMLPNGTQVVSGSTWETCDGNANCGGTIWEHLRYHAQQTISPPSISTPVYLRMLWQYNQSVWHANWFYNYTGQPWTRFGSFVPDFREGHYFDVGVEGAGNYPCSCVYFYQFGVASKTPVAGWSVQLLYPSFVHPDGSWGVIEHASIIQGVSSYWKGNYRWGGEPYNGVFARANTNDQTLPAGILQLTYSGTGTLPDKTVLW
Ga0209235_10001406	F009061	N/A	MEETEYPDQFAEFLAFLCEKYRIDRSRLFVEYSSRPPLPLKGTRAGYYEGLLSFREKDGRVEFLITVFKASREPLLTLAHEFAHLVKNLKSGNFDKHLRPPDDVVEKAFDEQAVNDLAEFRSLDNRN

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209235_1000140

Overview

Ecosystem & Geography

Associated Families

Sequences