Scaffold Ga0209235_1000060

Overview

Basic Information

• Taxon OID: 3300026296
• Scaffold ID: Ga0209235_1000060
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_20cm (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 41361
• Total Scaffold Genes: 48
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 37 (77.08%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: Angelo Coastal Reserve, California, USA
• Coordinates
  • Lat. (^o): 39.718176
  • Long. (^o): -123.652732

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002975	Metagenome / Metatranscriptome	516	Y
F003037	Metagenome / Metatranscriptome	511	Y
F014368	Metagenome / Metatranscriptome	263	N
F016387	Metagenome / Metatranscriptome	247	N
F029395	Metagenome	188	Y
F049864	Metagenome / Metatranscriptome	146	Y
F084018	Metagenome / Metatranscriptome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209235_100006011	F003037	AGGA	MWVEFKCPICGGDLDDDKSMANFMICNESSHGTLRFFTGDGCFFTSNAKVAEELVKKGKRVHVVDPKEFFAKQD
Ga0209235_10000604	F002975	GAG	MADFCSRCGKTLSLIDPLLELKGLRFCEDCYPDVKREHAAASMSDKMDRKNRAAFADDESDENLRGSIIKGKQALAAKENEFKWDNPSLSLIASALRILTDQNKIIMKQNELILRELESRTPAVKSK
Ga0209235_100006040	F084018	GAGG	MDKKSSSFTSRDLALVAGMSALYLGYSYVSGVTLGHTIREVDLFFLISAVFTILVSLTRKPWSATILGTVTGLILVTTPGAPLAVTLALIPNGIVFDLTLRAGDHLFDDLSRKRFAVAGALGNLAMAVFGLAMLQAFGFFHGFGVSTLVLIWVTALVGDTLVGALGALFGTAVVRRLGERVRSPLIR
Ga0209235_10000605	F049864	GGAGG	MAKFILSVGDGTFKILASEAKRRDVTVQQLLRAVIVPEWVRENIEPSPPSIAPREVAPHLIHQSIYPSQRDQMLQAPVNRLRP
Ga0209235_10000607	F029395	N/A	MDATLADNEKRDGLSGSYVRDAKTDGRLRNLLIDLIASSKALDARVWLDGVYTDVDDEQVRGEWINDRDVYFKVEGRVDKRNSL
Ga0209235_10000608	F016387	AGGA	MTLAPTRTMFELKSTPVSSSRSVTRTLRLDEDVEAGIVEMAEREQFSFNLLANRSLRKLVEWEDKATKFGFIQVPTSLVEKVFSILTDEEARELGKEAGANTIPEMVLFWFKKFNPETVLKALEMIGSYGNAFRLQYTIDGETDTVVLKHDRGPRVSAFYGELVQSLFKPMGAKVETHETDGQIVATITRPLTGLASEHREAPLIPSFAGAKNGRGYKR
Ga0209235_10000609	F014368	GGA	MTQIENALKTETRRSPDTVTRTFRIDRDVDRKMEGLSSEGRVSMNQMANKALRRYVEWEVNAEKFGTVTTSASTIRKFFDYLTIEQAKEMGSWWGENQAPGIITFWFKKFDFDSVLKALEFLGAQYGRAFTSDYAFDGRSHTLIVKHDMGLKASVFYAEAVKAAFSHLGLGTDIFVTDDQVIAISPPDPAHPLNRSYEGAADLKYPTSATSRPIPKLRRGQRADTENRED