NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209235_1000024

Scaffold Ga0209235_1000024


Overview

Basic Information
Taxon OID3300026296 Open in IMG/M
Scaffold IDGa0209235_1000024 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_20cm (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)52702
Total Scaffold Genes64 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)45 (70.31%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameAngelo Coastal Reserve, California, USA
CoordinatesLat. (o)39.718176Long. (o)-123.652732Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001571Metagenome / Metatranscriptome669Y
F006617Metagenome / Metatranscriptome368N
F021077Metagenome / Metatranscriptome220Y
F031371Metagenome182Y
F097057Metagenome104N

Sequences

Protein IDFamilyRBSSequence
Ga0209235_100002415F031371AGGLSKGFGKWVYRLTLARWYYNYAWGWVIGYFLSTFSMIVTIYYLIPGLRDLFSFPIFLAGSGILLVGGGWVLGKILVKRFKIQPIENYISSEVNPFTNAALTAKERVYWNAMVVLLKKEHARPPDAEVAKCVEQMNMYIKGKVPFNFDELDNFELGEESEPQGPLTKDAAKWSPPGDIKEGGDTPI
Ga0209235_100002416F021077N/AMMVYLIRTAVPKLKFNKEYLQRLTKPIPKKEPGMKEATTAEVQAQPRHPTGFLQYCMNCGKNQTFRVDALGWKTCTVCHGTAPDRSQSPI
Ga0209235_100002421F006617AGGAGMLLWYVWIRLVDGAWHRLDDISKQLHLPKNAVEWAAKFLCDKGMAESGFEEGEIRLHQGGARFEDAVKTLLSSAKPPR
Ga0209235_100002441F001571GAGMISQVRQGPERVPERRLALVHRVIVPDKEYPKEYAILVTDRRSVFIRQRKTRRSFVLRYEMRIGTALVTDAIPKTLDDFEQTSPESLMADDSNLTVPHEAVISLAMRTEEHERRKRDLFLWLTMRRQGEVFQVYNFEMKYRLDPDRDAMIKFYMVPLGAYFKPRRQTQSRETILREYAADALEIFQRVLPPDCIFVAG
Ga0209235_100002443F097057GAGGLVDISDPVVWSTVAQTIVLTLTLVIFILSFRSQNNATREAAYQRALDDYTDSMKMLVENPQLSKLPMEMARANMPTRAELQSQPPESMVVRNYMLLLYGIFERIHLLYRKKWIDSDTWNQWSLFLEAVTRHPAFRDVHRTSEGMFDKPFQDYVSNILSRKS

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