NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209235_1000018

Scaffold Ga0209235_1000018


Overview

Basic Information
Taxon OID3300026296 Open in IMG/M
Scaffold IDGa0209235_1000018 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_20cm (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)57087
Total Scaffold Genes71 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)47 (66.20%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameAngelo Coastal Reserve, California, USA
CoordinatesLat. (o)39.718176Long. (o)-123.652732Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006839Metagenome / Metatranscriptome363Y
F009951Metagenome310Y
F010906Metagenome297N
F011289Metagenome292Y
F012492Metagenome / Metatranscriptome280Y

Sequences

Protein IDFamilyRBSSequence
Ga0209235_100001820F006839AGAAGGMDQVSKALEISEQEASRLYQQFEDRIASGDAMENEIDRNLWEDVYNDSVGNEKITFVRDNGFYHCRRADLDKMDSPALMAIFETSKKFLDFDMYRRYLDSKPPVGYDPMAMQRQIKRAVDLIEQVLKQRWVSGESKGIDGESR
Ga0209235_100001822F011289N/AMSRKLLVIGVQFALNIFLAGWLYDEYLHNRFMQDYLASTFSTASFVLPVGLVAFAAIVGGSFTAYSRRHHISTGHATPRLTTEMFVGSEEKPAILDTCPFCNAPLKSISENRFQCRKCRRYFKK
Ga0209235_10000183F009951GAGGMDIAEEQRMLEEKVGKALEEARTKLEMALDSLSKGGADSEKRVWLAEEASEYSSLLYSLTYGLEDEDPPVPVRKRNAESIPLVKESAESLKLATELRGKLPLEGYRHLRNAVYKLRQAHYILEKAGMKKR
Ga0209235_100001839F010906AGGLSNLKSLVGAENVLAECAGVNYTVYVTDSRLLVGKRFSTGEKFVNVPHADVSTLELITKSLIPPLTYAVLGAIAVFLVWWFPGQARLSLPQAPFDLLLIGTFAVFLAAIVATWWRRRVAVLRIGISGTRDPITVRLVPASKAEGVFKALKG
Ga0209235_100001850F012492GAGLGVEGEEAQPRKSNSRRYVENLLGWPSEESTGVGVYETALLTSLLEYFIVLFFGTWLIVEYFYNVYEQQYFGSFNPVFLVGVLMAASAYGFMRLVSSVRTGLRPTRLKRKKVEDDY

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