Scaffold Ga0209235_1000005

Overview

Basic Information

• Taxon OID: 3300026296
• Scaffold ID: Ga0209235_1000005
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_20cm (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 86319
• Total Scaffold Genes: 82
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 61 (74.39%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (54.55%)
• Associated Families: 11

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: Angelo Coastal Reserve, California, USA
• Coordinates
  • Lat. (^o): 39.718176
  • Long. (^o): -123.652732

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009061	Metagenome	323	Y
F013074	Metagenome	274	Y
F014881	Metagenome / Metatranscriptome	259	N
F022171	Metagenome	215	N
F035435	Metagenome	172	N
F037658	Metagenome	167	N
F043324	Metagenome	156	Y
F044399	Metagenome	154	N
F074722	Metagenome	119	N
F097044	Metagenome	104	N
F102998	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209235_100000510	F009061	N/A	VERAGHVAFQASLNDVTRVEATEYPDQFTDFLEFLCKKYRIDRNRLFVEYSSRPPPPLKGSRAGYYEGLLSYREKNGLSEFLITVFKASREPLLTLAHEFAHLVKNLKSGNFDKHLSPPDDEAERILDNQAINDLAEFHELRHH
Ga0209235_100000516	F043324	GGAG	MTGHSGSKQDFNLRKMGSRMLKAARFNGETFRELRDDTTATAQSLSLVAMVGLCYGAGLGLFGFFIVGISLLEILTITLIGLLAAIVIALAWSVTSLLIVRKLFRGNIGYWAFARPFFFSWAPGLLFILMSGPVPILFEIVRATSTVWIGIASVFGVKNTVGISTQQSMLTFITSTVSLLFVGTIVLSLIQFLIIK
Ga0209235_100000518	F074722	N/A	VRLERLNPVTSLEFYKLHQHFISTHEMMLISRETVVSRLPKFMQTLDDIIYRELEKIAKRRGITIQELIRAVIVPEWIQGLNGVEVKDPSPAKLNSWR
Ga0209235_100000530	F044399	N/A	LQSLTPRNILRGALLAFFPWGPAYIFERANFWFGQTNNGYWYYQFSQTRLEAYVVSFALGGILVAYLLRPRWAVIQVFLSASLIYVLFYLACPTYLAGTIWRSECYSLGPDGLAGVRLCTMMFSFGALPSFVRASYKKDKLNKKLRPWIAIFSAFITSVVTAWFPLTAWFSGVTYLAPLVPFQAALLFGVSEIAAGILAAKISRSLFVAAASGVTSAFLLSGFLWPLLCPSCDRSLLFLIVPLWGFFALIGGVLELGLPRKLSIGPLRHFNPRLEDIRRVGIAVVLLFSLWTLISFGFWDPSVLYATSISPGTGHLTLGTPTYPYVAGYYNSTQYRICCVQIGVSFTKVDLKALAPNNFLMAGMGVQSPNCCIDGWDFGWRADLFVLPNGTRVVSGSTWETCDGNANCGGIMWEHLRYHAERVINPANSSTPVYLRMMWRYDKPDFHADWYYNYTGQPWIQFGSFVPDFREGPYFDIGLVGVGNYPSAYAFFYQFGVASKTPVLGWSVQLLYPSFVDPNGSWRLMEKANIIQGWHSYWKANYRWGGEPYNGVSAEANANDKTFPVGILQLTYSGIGTLPEKTVLW
Ga0209235_100000538	F022171	AGGAGG	MADDLLRTITTQALIAAFALLLAISSLLRLLFFVYFAQPGGLGFPMRQSVDASAVVETALTVVLFLLSVISIYSLLGLRRRYSRLLAMAEKLGR
Ga0209235_100000544	F097044	N/A	MDERTRLPVASDEELELRDRDVMNLLDQLELYTLRVGKGTANQKDYWLFVHKSMKSGLLMTKAMEKYLNYKLQGLGAKPQD
Ga0209235_100000547	F037658	AGG	LAAIVGTSLDRPLIESIDAALSALGTSTRDSVLLYLRKRYSISLEEAPERMDEFLQALRALLGYGARVVEKLVIARLVETNEVSLAEARGRNLAEIVNLSSKGRNKV
Ga0209235_100000548	F035435	GAGG	MLDPIVLPTLYFIAVLELIFQAGVVFYAYKVTRITGSFRAWTLIIAAFSLLTIQSVVGLALTLSLPADQIASLISSVGETTAILSSMVTAIAGALLFLGVFGLAKRFESQAKPQPEHGKKTPV
Ga0209235_100000555	F014881	GGA	MGFRTGLFKLKRSLNNLAFRMSFVKLAPGSSRPLLPVASFLILAFTVFVLAGGLFILVGAGTSVSLLNVQQGLGFVYPHDINNQTPAEGVFVALLYALGIVGLYMMFTSTRNAYRPNRAYGFLGFGMLLSFVFMATAYFVLYQKLM
Ga0209235_100000575	F102998	GGAG	LKFRVIDLGQDYPGHITDFADARNSFVKDLPDDEYVLFVDSDEEAPKMLLDYIGRLKPQFPYYWVRRIELVNNKYVPVFNPNYNGRLCSNRVRFIGRVHEMIIPREPHGVIDIPIIHNHTGPASYTGGAQSGLKLGLLKVREVVRGW
Ga0209235_100000576	F013074	N/A	VSWEVIGAIIGLTGLRLGWIVKRQVHKDISFYILPGLSNLRKVIRYDPEFSYVPYGLIWYAINVPIVRLGRYSGRFWMAVLALIDSLFLWYSFQYLGLTVFFVYVVIGTFQLLRAPWNASINWLIMLAPISWIFLLMAPIAKFPVGLPIQVWRYTGRAVGHQHNYIYFGLLGTLWLIVCNHLYLLPEIESSIVIGLGVVWCFIFVYAYLERRAGRRESMAEPLA