NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209234_1006931

Scaffold Ga0209234_1006931


Overview

Basic Information
Taxon OID3300026295 Open in IMG/M
Scaffold IDGa0209234_1006931 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_20cm (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4299
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (86.67%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameAngelo Coastal Reserve, California, USA
CoordinatesLat. (o)39.718176Long. (o)-123.652732Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007278Metagenome / Metatranscriptome354N
F015777Metagenome252Y
F024863Metagenome204Y
F035431Metagenome172N
F096984Metagenome / Metatranscriptome104N

Sequences

Protein IDFamilyRBSSequence
Ga0209234_100693110F015777GGAGVLVIERKQSPGNTPVILFHENPGFPHGRGRPYNTRMLVIISVASLRSGHLEVCVQRPQHQANASRIYHSSEQVRATLLKFGIIEKALDEVLKLLPQLGTGERLNFPPVHVPHHDLVAEGFKLGIG
Ga0209234_100693113F007278GGAMLGMALGALLTHIRHKAQTARIVQELEAKFGLKAESEKHDSTKPDAAA
Ga0209234_100693115F035431AGGAGMLIERGSCRFNLRKTSEGKPVIEMEMFQNTVPHLAAVTLSFEVLSGITIEQTRDLIEKMNDQIVGLVVTPK
Ga0209234_10069314F024863GGGGGMAAAHILQVAYYDTLRELRVKMLEAAGYQVTSVSGNDNAMGLDGAVIAGANLIVVGFSAEHSVRAAMVLWFKTHYPKIPVVVLQFSSWEKFPEADVSTFSEDPTIWLAEIASILKS
Ga0209234_10069315F096984GGAMTQDARKDWRDLCREAVAETDPARLIAIVNELNRELDEAQKKKAAVYLQQIDKRRA
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