Scaffold Ga0209234_1005218

Overview

Basic Information

• Taxon OID: 3300026295
• Scaffold ID: Ga0209234_1005218
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_20cm (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4921
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (63.64%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: Angelo Coastal Reserve, California, USA
• Coordinates
  • Lat. (^o): 39.718176
  • Long. (^o): -123.652732

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001912	Metagenome / Metatranscriptome	618	Y
F012563	Metagenome	279	Y
F016134	Metagenome	249	Y
F018901	Metagenome	232	Y
F039072	Metagenome	164	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209234_10052183	F012563	GGAGG	MFLGGFAGGFLERGLTHIGYGIYFTTSRLIGIDLGANGGGALGGGTFAGFIHGELMPKLSSEESAKTITDLERMKEFEIEKDQISRIELKKPGLLGTGHIVITPKEGKPEKITLRHRIAYDRLMTLTQAFSPELASSS
Ga0209234_10052185	F039072	GAGG	LTKFMMSLRDENYRVLTGAAIDRGISVQELLRAVIIPDWVKETPRGIVADNWPSIRPRR
Ga0209234_10052187	F016134	GAG	LHDRASEATQFLKSKVEGKVRAEGTQLQIEGAKTKQVKLLLHKFLHHQGLNHYRVLSQSGVLEVTPPEKHVLRPPEPGGSAPTAAQTTPYLFPQTPALTPEKKRKTKPKHKYE
Ga0209234_10052188	F001912	AGGCGG	MGLSSWDEGSNSDQLTGLKLDRWLVGHRKILVVQWAKLPRYGREGAVEVQPFPAEKRLCVSEAQGLSGEAMKGEPDDDGNPQSR
Ga0209234_10052189	F018901	N/A	MLKTKIVAFLGLALTLSSLLMGSRTLGFQRAVLSLQLGGLLLVLGGFFLLFDNHGIQDALGGLYDLEAAMN