Scaffold Ga0209234

Basic Information
Taxon OID	3300026295 Open in IMG/M
Scaffold ID	Ga0209234_1001068 Open in IMG/M
Source Dataset Name	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_20cm (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0209234_1001068 Open in IMG/M

Source Dataset Name

Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_20cm (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	10203
Total Scaffold Genes	13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (69.23%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

10203

Total Scaffold Genes

13 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

9 (69.23%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (50.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Archaea

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location Name	Angelo Coastal Reserve, California, USA
Coordinates	Lat. (^o)	39.718176	Long. (^o)	-123.652732	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Angelo Coastal Reserve, California, USA

Coordinates

Lat. (^o)

39.718176

Long. (^o)

-123.652732

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F004048	Metagenome	455	Y
F016137	Metagenome / Metatranscriptome	249	Y
F025000	Metagenome / Metatranscriptome	203	N
F073369	Metagenome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209234_100106813	F004048	N/A	IVTVPGSLPEADLMLPEFLKGKLSLDEWKILIALHLVRFKAYNQTRMSRLLGKIALAPRGLFFLLLFYIPAAATGGLSGPVLYFPSPIFLIAALWIQRSLRKSLKRREFEQDRNVAKQLGTQQVSHVLEKVGNLDQKRIPADIRIFLLPYVAYWSPSIKERIRELGNPRLEDLPRPARIPKIGLRGRIIIVFVGFGIFWGAGLIESNFFARGQTMIVCTDVTCSALVVIAAVGFWMAIIGGISIVVWIFRRFL
Ga0209234_10010682	F073369	N/A	MFPSRSTASDDVKLWLPRHKCRICGVEVEYTQVKVHYQTTHPEYGKWGRQLHTLMWSVLGSGIALVIVDALYLRTLNQVLQYIIPGYLFGASFLLIGLHARKLIAFRDAWDKSHPLPKERTEES
Ga0209234_10010683	F025000	GGCGG	LVGREPFGSDHVRNTTLALIFFVVGIAVTIFGSFYAVAYSVASGLGVSTVSLFGIVFVIGGAIFGLSEVLITYSLQSSHGHTLLWTAYGISIFLGVVNVFLLPFGSGGFWPFYFGIGVLLFTGFLAAIPAALYGTAFYLARERIVRHEIPPPMTQQQPGKPPW
Ga0209234_10010686	F016137	GGAG	VEIEKLQHEINERQAKGKPTDALEKSLEELEREKHDLVERIEALWSA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209234_1001068

Overview

Ecosystem & Geography

Associated Families

Sequences