Scaffold Ga0209234_1000997

Overview

Basic Information

• Taxon OID: 3300026295
• Scaffold ID: Ga0209234_1000997
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_20cm (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10452
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (53.85%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: Angelo Coastal Reserve, California, USA
• Coordinates
  • Lat. (^o): 39.718176
  • Long. (^o): -123.652732

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018437	Metagenome	235	Y
F023825	Metagenome	208	N
F053212	Metagenome	141	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209234_10009975	F018437	N/A	MKSRVSRALVAATVACNGGLQPIPSSPGISGVVTFRGAVPDSTQAVYVVAYHTFPHSRDSLFTFQPSVQPLQQLPLGGATAEYTIPVESGRYEWVLAVWVKRGFTLANADSTLRETGYYRDPADTSRPGVVTVLSQPTDSIDFVVDFGHMHPPCRYYAPPCP
Ga0209234_10009977	F053212	N/A	MLYPYGVAATMLLCAAQAIPLDGTWQLTRIFRAGTPVTTRAIPLDSTVYIRVSLESHTGGWISGRLYRRYHGEPDRSKVEGGRLAGTGRWIIGVEIEQPAWARARTAAWLVGDTLRLGTSLVPDADSLELRRVSPDAPDPATVQEVVTGR
Ga0209234_10009978	F023825	GAGG	MTPPRSTLFRGASLLVTSLAVSCGGRDRAHSPTCGMAQLIGPSLIQDQLRLFPFVLAEPPRGLPGALPARVAGNAQQSTVAITYTGQRLALAYQGSNFPPYPSDSTAYALLVVDDSSQRAQGVLLYEGQRPPRSYPQLGTVSGGDKTIPLYGVRVDWRSVSNPLCPLLGPAAAPTP