Scaffold Ga0209234_1000513

Overview

Basic Information

• Taxon OID: 3300026295
• Scaffold ID: Ga0209234_1000513
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_20cm (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13413
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (58.82%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: Angelo Coastal Reserve, California, USA
• Coordinates
  • Lat. (^o): 39.718176
  • Long. (^o): -123.652732

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007853	Metagenome	343	Y
F021074	Metagenome / Metatranscriptome	220	Y
F036617	Metagenome	169	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209234_100051317	F021074	N/A	GLVEESEVDRNLWEDVYNDSFGNEKITFARENGFYHCRRSDLENMDSAALMNIFETSKKFLDFDMYRRYLDTKPPVGYDPMAMQRQIKRAVELIQEILRQRYEKEADH
Ga0209234_10005132	F007853	AGGA	LSDRSSVEQEYLESKLESALDDAWSKVNIALDETSKSSADLAMGIWFAAEALEYSSLLFNLTYGLEDVKPTIKPRKGEAALVLVKDSMELLKRAREGRKRSAADAYVNLRTAADFLKSAHLAQVRKSTKKRE
Ga0209234_10005139	F036617	N/A	MTLLLLAIYIGTYRKIRSSFTMGLVLFGSFFVILNLSILVFWLFLFQNVNVSSATALVDQASLYMLLVNIGEALALSNLLRVTWK