NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209234_1000431

Scaffold Ga0209234_1000431


Overview

Basic Information
Taxon OID3300026295 Open in IMG/M
Scaffold IDGa0209234_1000431 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_20cm (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14371
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (78.57%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameAngelo Coastal Reserve, California, USA
CoordinatesLat. (o)39.718176Long. (o)-123.652732Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013998Metagenome / Metatranscriptome266N
F014491Metagenome / Metatranscriptome262N
F016384Metagenome / Metatranscriptome247N
F019978Metagenome226N

Sequences

Protein IDFamilyRBSSequence
Ga0209234_10004311F016384AGGMSLTRNLDFCQSGEGSQAWSEVLGLREDFKSHLSWVMGLGHLSDTFSRHAVPNYLVRVLHPLSQSLRVNLLLGMLPDCFLEVRALTEQLARAFQADLKFSKESSFTSKLSRLDVREPSLYKLTGETDTSVLPLLSELGHGWVRMDQPLTGMGASLPVSAASITYTTRDIPELLRLTSAVKRFRELLSKTMSQWSSRLDRKDSPPAPKAS
Ga0209234_10004315F014491AGGAGVTPGSPKGSWHNTAMILLILASLAMFGTIAYTIALQEITNSAISYITGLLISVTGILLGLSGLTPQSKSLERMKLQVTLTIATLLWLVAVVMIAQTAGPFNFAASTAVLRYLFLVGIALFTILVVMYSTATIEATRQRLIAEQAAKSNQPGRTTG
Ga0209234_10004316F013998GAGGMPLKMHRLLSLIAFVLALIGGVLVVMSALGGLGHLSIGSLAVNSLVFLFGLGAILGGWLIYTGIRKLGGIMTLAAGIILFVLTGGTGTAVILVLVAGVLGLVAAEMKPWWAFWR
Ga0209234_10004317F019978GAGVPPWERAQLSFTLAERRRLRKVEENERPGKARLLDLEENRKRLAEIRKHFCADCQRYIRSDQLNREERKIGEEQGFCKCAKNAPKPSR
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