Scaffold Ga0209234_1000430

Overview

Basic Information

• Taxon OID: 3300026295
• Scaffold ID: Ga0209234_1000430
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_20cm (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14386
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (64.71%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: Angelo Coastal Reserve, California, USA
• Coordinates
  • Lat. (^o): 39.718176
  • Long. (^o): -123.652732

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002500	Metagenome / Metatranscriptome	553	Y
F019298	Metagenome	230	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209234_100043014	F002500	N/A	MLEFIVQPLVITLDDIDLSLISAFIGLAVTIPVTYLIVDRVVARHDRKKLEPVEKLAKERLRSKLGVGFLTTFLITLVIDITSAVGEKKTLSKDVLSLHIEKLKGAQSDLEMLLGVYNNVLDVRTTHLTSSIILFIEHLQEDFEYLQQIYPKPPTRVHASHIEDVILKTVRLTKEELETLGTDSVQIRALEEWLTNYTKTRVTPSEPREIIEVSGKHQIG
Ga0209234_10004303	F019298	GAGG	MTFTAQRLLDTTPRWLSITLVSSSSALLISGVGFVLNLFDPFNITPFTLLLHLIWAIVVSSWVLNLKVKLPPEKKALLAIGVAVAVGSMWGAVQQWAAYLQAGIVNDITLVAGAVAMDAVGGLVVYILYHLNILGRKLGSSGPQSSPGSASTSLSP