Scaffold Ga0209234_1000127

Overview

Basic Information

• Taxon OID: 3300026295
• Scaffold ID: Ga0209234_1000127
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_20cm (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 20549
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (80.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: Angelo Coastal Reserve, California, USA
• Coordinates
  • Lat. (^o): 39.718176
  • Long. (^o): -123.652732

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003257	Metagenome / Metatranscriptome	497	Y
F017702	Metagenome / Metatranscriptome	239	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209234_100012718	F003257	AGGCGG	MQRTRYPERRRTTRLSLQIPLTVRCWLPESETIDLKASTYIVSAYGALLLMDTPLILGQNVRIINQTTSESAECFVTSLREKRERRFVGIGFVNPNIDFWHIVFPKSGTRQAVRSSLTGGLVPPGFRQDNSPQF
Ga0209234_10001274	F017702	N/A	MTNSIALRCDGCGQTASSEHIARRLQRLEWTTRYRPVHINTLVLGAFSPQEESDFLYAPSGEFHGEAALLLDALGIATVGKGADVVQAEFQRAGFFLTHVLECPLGKHAGRGIESATLLAERVQPMARRIRRSLKPKRVVLISQALGPILDRLLALELGCPVVLEAVKFDSSASGNSVARLRDALAGPPGD