NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209839_10122622

Scaffold Ga0209839_10122622


Overview

Basic Information
Taxon OID3300026294 Open in IMG/M
Scaffold IDGa0209839_10122622 Open in IMG/M
Source Dataset NamePermafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-050 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)874
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil → Permafrost Soil Microbial Communities From The Arctic, To Analyse Light Accelerated Degradation Of Dissolved Organic Matter (Dom)

Source Dataset Sampling Location
Location NameAlaska, USA
CoordinatesLat. (o)68.6135Long. (o)-149.3144Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009643Metagenome / Metatranscriptome315Y
F104566Metagenome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0209839_101226222F009643AGGMSSAWKARLGGALRGGEVAGLYFTTALLIVVEFCFVCWLNRIQIPDVPNAGSGFIVLPPWYQKPRFEVTLLLTILAGLLFSVCWGFWDLWQKRTKTESWEKAMQSVRQRVKTTTFVAALTGFQLALVTWLR
Ga0209839_101226223F104566N/AAVLTAFEARMEQRLDLGVVNRALNVFLEPRNPFEPERRRKPKMETLIFGMLFGLVVAAFLFFNLAAPRLQVYP

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