Scaffold Ga0208277_1088764

Overview

Basic Information

• Taxon OID: 3300026292
• Scaffold ID: Ga0208277_1088764
• Source Dataset Name: Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV205 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1149
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location

• Location Name: Pacific Ocean: Eastern Tropical North Pacific
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004493	Metagenome	436	Y
F018289	Metagenome	236	Y
F052260	Metagenome / Metatranscriptome	143	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208277_10887642	F004493	AGAAGG	MRNSVTKNNALDFTNDEWNQLIEGNGLLIMWFIEWNKTEHTPYMDIEAFFRLKYNQSAGGDPWHVKDAKISLDGKYVSEGDDDLEPYFLINTDDGVGYIYPYAFVALPKKSGGHHVVRMD
Ga0208277_10887643	F018289	AGGAGG	MTQFTRQQLNTLRKQMQNSLSMFADKTDDLTIEVGNCSYNGGEATFKVKVLLKGAKTREQIDLEFYAELHNLDLTKTAKLMGEDMQLSGYKSRARKKPYVLKRLRDGAEFVADQNLIEKFYKKEETNA
Ga0208277_10887644	F052260	N/A	NDGTKGFRFNFFGKKGIVRRRKLQSNGIKITKGDCMNAYHFGKTTIYTEQSTNKTTARKFCHLAG