Scaffold Ga0208277_1046538

Overview

Basic Information

• Taxon OID: 3300026292
• Scaffold ID: Ga0208277_1046538
• Source Dataset Name: Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV205 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1825
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location

• Location Name: Pacific Ocean: Eastern Tropical North Pacific
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005813	Metagenome / Metatranscriptome	389	Y
F006217	Metagenome	378	Y
F029123	Metagenome	189	Y
F103094	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208277_10465381	F005813	N/A	QVCTVSPTKRGRPMKLYKNSNGVWAGTQADARKYCGKVYSTVDVPTDKPNLLGFLNLNQVGSLASSPTLEEVRTGEPTTSAMAWFRWSYDCMCRGEYDDAKEHLAKALTMSRKEKTDEE
Ga0208277_10465382	F103094	AGGAG	MKSEKLNIEVSLSSEHSCYVSVKDYTIYVEVSKATNDKPYISFWKKGWEDDRAVTVSH
Ga0208277_10465383	F006217	AGGA	MIELLLSVIEEPNQFHKYCMEKHQHWTDRAACVQELRHAERKLEVETLRQFLKENPHYRYPGMALPNGKIKPLDVCWGSDKTYYIGSDKVKRSKC
Ga0208277_10465385	F029123	AGGAG	MSYEVWFGQNGKWFGYHSFKHKMDAQRYEERYKKVFPNLTVEIRRREHAS