Scaffold Ga0208277_1011394

Overview

Basic Information

• Taxon OID: 3300026292
• Scaffold ID: Ga0208277_1011394
• Source Dataset Name: Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV205 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4526
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (93.75%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location

• Location Name: Pacific Ocean: Eastern Tropical North Pacific
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004493	Metagenome	436	Y
F029594	Metagenome	188	Y
F052260	Metagenome / Metatranscriptome	143	N
F053978	Metagenome	140	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208277_101139410	F029594	AGGAGG	MLPDEMEAEKNRKLLLSQADTIEILKRNVRDLQGQLNQAQIRIAELKKDEV
Ga0208277_101139413	F004493	GGA	MQNSVTKNNALDFDDEQWSQLIDSNGLLLMWFIEWNKRDKDNLIQIQDFFKQKYNMSAGCDPWPTKYAKISLDGKFVSEGDDDLEPYFLINTDDGVGYIYPYAFVALPKKSGGHHIVRMN
Ga0208277_101139415	F052260	AGGAGG	MFVLLATKPLNDGTKGFRFNFFGKKGIVRRRKLQSNGIKFTKGDCMNAYHFGKTTVYTEQSVNKTTARKFCHLAG
Ga0208277_10113949	F053978	AGGA	MQINDTTKQMIREIVVELFEETASSQVFGVNKQVLMLNEHLQDILSKKIDKYGVKVYGATLEERY