NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209890_10092175

Scaffold Ga0209890_10092175


Overview

Basic Information
Taxon OID3300026291 Open in IMG/M
Scaffold IDGa0209890_10092175 Open in IMG/M
Source Dataset NamePermafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-049 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1060
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil → Permafrost Soil Microbial Communities From The Arctic, To Analyse Light Accelerated Degradation Of Dissolved Organic Matter (Dom)

Source Dataset Sampling Location
Location NameAlaska, USA
CoordinatesLat. (o)68.6135Long. (o)-149.3144Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F044126Metagenome / Metatranscriptome155Y

Sequences

Protein IDFamilyRBSSequence
Ga0209890_100921751F044126N/AMHRLDFKEASETITAVDAELEALLRVVWDQAARERQRDLCFYLAKYPYKHFVFKNGRPLDPDGQPLRADLLVANLLPVGLILDNALEVIDEVIRRDEVIEFPQSLLFKRQLIGLWELIDEQLHVEGRPLSNSTISSGSRSLRFLEFPTQRVQWDRLRARYRQLSTYDKGRELKEIDLIEMIGEVDRKSKQWATQILYFSSQWFKELERQLADPECRAPAMELTSYFNNTGWASLARVRYNDDQLTD

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