Scaffold Ga0209510_1000402

Overview

Basic Information

• Taxon OID: 3300026290
• Scaffold ID: Ga0209510_1000402
• Source Dataset Name: Anaerobic biogas reactor microbial communites from Washington, USA - Biogas_R1 time_0 SIP DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 61980
• Total Scaffold Genes: 87
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 63 (72.41%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (70.00%)
• Associated Families: 10

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Bioreactor → Anaerobic → Unclassified → Unclassified → Anaerobic Biogas Reactor → Anaerobic Biogas Reactor Microbial Communites From Washington, Usa

Source Dataset Sampling Location

• Location Name: Washington, USA
• Coordinates
  • Lat. (^o): 47.6525
  • Long. (^o): -122.3049

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031110	Metagenome / Metatranscriptome	183	Y
F064748	Metagenome / Metatranscriptome	128	Y
F078879	Metagenome / Metatranscriptome	116	N
F080199	Metagenome / Metatranscriptome	115	N
F088950	Metagenome / Metatranscriptome	109	N
F090570	Metagenome / Metatranscriptome	108	N
F092110	Metagenome / Metatranscriptome	107	Y
F099240	Metagenome / Metatranscriptome	103	N
F101424	Metagenome / Metatranscriptome	102	Y
F103498	Metagenome / Metatranscriptome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209510_100040215	F099240	AGG	MKLLFNYSDFHKFPLNVCFSTLRLLLNDNFNGVYKDTNGKLIAVFDYHETEREQRIIRSTSSFLEIYGYDLKKHTEIVDSIEHLEFVTKTCGVDYE
Ga0209510_100040221	F101424	AGG	MNYIEGLKIIGWIVIIVVCIAFLFIWYAAFCYVAYVLLGMIGITGLWQTICGIVLGLFVASLPMSIGHYNKR
Ga0209510_100040246	F031110	N/A	MEFSDILKQLWHSSYSDALTDPKVHVFVGNSRHISVSPFYNSNCDMGFEDEKKLLQGKLRKINENLFKNFHLLCFTELKIVPKFKPGKIIIFNEYGDFVNEQHIRNIQKIINANPLTVFKVKTKQNVELKGNNVRMIKK
Ga0209510_100040255	F092110	N/A	MSCKDYIELKPGMEVKLSYEPWGYKNVDAVIDSVDVKYHYDEAHNCGVFHPVVVCYVGKYRMTFKGPINWETLVIKPCRKVYVKDLKVGDVIERGILRGFVKYVGEESATIQWFSKLGLKTFDNYYDKEIKYAEVVGHIDLWNL
Ga0209510_100040261	F064748	AGG	MKKYRFIGNMEDVTPCGNMDEECIAVGCKGKVWGQCHFDPNLNLLSSGSEYYEEVRDTVFRVEKDGAYSNGGLYPFFSDNGKLWMKASHLKKHFEQSIGYNYETKQSIPLYKEYPYNAEVVEYALVEVKRTPVKKFVEGGE
Ga0209510_100040263	F078879	AGG	MTPDVSDEVKEGYDLLEGIGIVERTESGQYCPTEVGAVIIYAVLCKQMLGADADDFKSEESQQVMMNRLEEMDLVEQVDESFIITIEGFTTFFTNLTYDCPCREEFLDWLALATAELAEEMEQS
Ga0209510_100040273	F103498	GAGG	MGSTESCELQHCRLRTDILCEVQRREEKQDERFYALIDELRLDWKETKKEVILIKDTMIQGFIALIVAVIGVYVSYLLLNVNGFF
Ga0209510_100040275	F080199	GGAG	MKTMVQGVEETNLKLSQILAAVQENIDNTLDLFSADMTKEIKDSAPYDTGRYMSSWFYERKEALKYAIVSQNSYVLYNTVLVFGTEKFKPIANESRYKYSDSERGIIHDVRQIKFIYSIKLGQLIKRVNLLNANISLAGL
Ga0209510_100040276	F088950	N/A	MDIDGVLKEIAEFIEEKIPELDSKVTTIYPESERFAPPTVVIDIVAGRETLIIDGTKTHELVRVAIISDKKSEINRIFNLITDAFLNHGRELKTGIYKGISYISPVAPAFVEKNSAMKRELDIVVIEFRKRR
Ga0209510_100040285	F090570	AGG	MNEFGNAYIEKVWCNSVRTPKPLKVIPYKKDFKVFFSVKGTEIGRITIGIFVDDILDQMLTTNILEKNKSLAIWFWYPYKRKQMGKHIIQFKIGEATDRTADSVTWKYTSDKYIVEVK