Scaffold Ga0209438_1066535

Overview

Basic Information

• Taxon OID: 3300026285
• Scaffold ID: Ga0209438_1066535
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_20cm (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1181
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: Laytonville, California, USA
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021735	Metagenome	217	Y
F062041	Metagenome	131	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209438_10665351	F062041	N/A	SDARRIRSARRAEIWQKQVRPIALTMMLLGPGLGLGMSTLLGALGMGALGDAMGTGVGADALAATMARAYREISYAYFLMVGGTFPMLLGPVIVLVARRLDEDGIDARGGDPEEVLLHTLKSLLAVTEAQARRAQADAARMHTLLAETAAALQRGAAA
Ga0209438_10665352	F021735	GGAG	VSADELLAAERDPRRAAAGERGPPSVSLPLRLQPARASALGWSPDLYALTLLLGNASFRQEDGAVVPRGPGPVVAVCAEYDRPLVSLAPPTLAPYSLVRARLSGMPTLRLPGGWLRPPLRLENTHRLARIADRRDDAVLRATRFLEELNQAWHRRLGAILEIAWPVYGPEHAAGPLLDAVSGSPLPELTLP