Scaffold Ga0209017_10024748

Overview

Basic Information

• Taxon OID: 3300026280
• Scaffold ID: Ga0209017_10024748
• Source Dataset Name: Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP Bryant MS undermat 2012 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1662
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic Microbial Mat → Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa

Source Dataset Sampling Location

• Location Name: Yellowstone National Park, Wyoming, USA
• Coordinates
  • Lat. (^o): 44.534
  • Long. (^o): -110.7978

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029452	Metagenome / Metatranscriptome	188	Y
F092114	Metagenome / Metatranscriptome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209017_100247481	F092114	N/A	MRELLSITRHKMEQLLGDNPPKRDTWLIKCRRLREIVSNLPSNQIITTSIPEGHSNLLLINITIKAHAMMQLLRGTVVDFGDDTELYQTEFNKFLAANELALREAILQRLVYGLGAVCVVGDKQHGWRLQSISPTDLWWDCTTGDVMQPKWIARGYRDNDSNDYREVWYADVYHRYKVGSTDVDTHTNPYGVIPIVLFPAQYIPDTIYPIGDVELACPQQFILDEIRRTYLNMARRGAGFFSVKRSSIDETELQRLQNPDEVYVLVNEQDAIMPIPTPAPNPEWQALETLAKQDMDALMGISEYVRGVLPTGRAKFATEVVAAVAGQTVRIQAEWYNTKVALERLATVYYKLHNPNGTATPRALEDSLTSANQLLRTEMVGNAPSGNIP
Ga0209017_100247482	F029452	GGGGG	MIYEYRCAECGWLTVASRTVEQRDIAPRCERCGKLTKRVFPPRAQIIVPRVFQLECAREAAELVLPQNDAEKQYWDTFGIMDSDGDGE