Scaffold Ga0209017

Basic Information
Taxon OID	3300026280 Open in IMG/M
Scaffold ID	Ga0209017_10009491 Open in IMG/M
Source Dataset Name	Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP Bryant MS undermat 2012 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0209017_10009491 Open in IMG/M

Source Dataset Name

Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP Bryant MS undermat 2012 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	3559
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

3559

Total Scaffold Genes

4 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (66.67%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic Microbial Mat → Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic Microbial Mat → Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa

Source Dataset Sampling Location
Location Name	Yellowstone National Park, Wyoming, USA
Coordinates	Lat. (^o)	44.534	Long. (^o)	-110.7978	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Yellowstone National Park, Wyoming, USA

Coordinates

Lat. (^o)

44.534

Long. (^o)

-110.7978

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F044342	Metagenome / Metatranscriptome	154	N
F049463	Metagenome / Metatranscriptome	146	N
F093035	Metagenome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209017_100094912	F049463	GGAG	MKKDFGNEYQKSSKTLTQPQMQELLADMLKVPVYILGKTPNLDDLNAFLAQFGYQTNLALLRPVKVWANLEEDIINEADKVIAQFIKSDLESPVIVVILPPLVALAAALVVRMKEKCPTLKVLVVHYRVEHEPHFLGFELFCT
Ga0209017_100094913	F044342	AGGAG	MNDPVIPVTMHLPKSVVERFKRKAVELIPEEREEAPSLLLTLFINYMSSDDYWCLFLPDLTREDYKKWQEMANQVYDSIYETVKYHGAGMFPGEIADLAQAVVAARRMTPDDLIKLIIISARYNQVMWKRNDLNKDSPAPSQ
Ga0209017_100094914	F093035	N/A	AVPVDSSPVAMAMANWVNNNLKILQHKTNYSVMALFRQILRDSLVYGHSVSELVFDAINIESAPAYVLRKIVPLLPNRYAFRMSSEGDVLGVVPFRYDATGAFAPVYTAENTLFDKKVVPSAKLLHLIWDRRGLFPQGRSALVSAFKAWAMKQEFLEHVNILAKRIRKSWLGILPPDARRVCITNPETGEQEVVDPRQDLLEVLQALANGEGGVVPHATQVESFDIEVNGAGQYFMEVLKYLDRSILRAIYRRMLANNNDAAASTTGEFDRNMTSKLVKAVRNWFEDSLYSLSYALCYFTFGQAADDYAPKIVVGRGDGLPITVQDIALLHQSGWFTRQQKAALDIELGLPPDDGGEIIGVNANEGDEDERSRDSRYDALA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209017_10009491

Overview

Ecosystem & Geography

Associated Families

Sequences