Scaffold Ga0208411_1082018

Overview

Basic Information

• Taxon OID: 3300026279
• Scaffold ID: Ga0208411_1082018
• Source Dataset Name: Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014F12-01SV261 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 930
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → unclassified Cytophagales → Cytophagales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location

• Location Name: Pacific Ocean: Eastern Tropical North Pacific
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027653	Metagenome	194	Y
F071324	Metagenome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208411_10820181	F027653	N/A	KENSRGLKRSDLDEYYQRFGKKSWLRDEDVYPVVPNIDIFVNWLMDIKEHEYFDKFNYYIFGGFISWPEKTKDIDLLITKRDGQYATLKELEELMVDMFDSAYDYHKFFLDTFYMRTPQWIADYPRNEERLRSVEKTGLWITITKNKPEYPIKFRRYGKLNCCYRPSFTNWYDNDSDMINRWVALDANYTRMVDLRRIIKYYENNKERNMEDFLNEFQEYSGY
Ga0208411_10820182	F071324	AGGA	MISFIVPFMTIVKDKFLNINEGFEYSDSENMIYATTKTIKNINSLKCEKEILLVDNSHTWPEVDLPNVRVIKGWQALPLEEL