Scaffold Ga0209018_1004887

Overview

Basic Information

• Taxon OID: 3300026278
• Scaffold ID: Ga0209018_1004887
• Source Dataset Name: Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP Bryant BLVA 2012 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7491
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (64.29%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic Microbial Mat → Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa

Source Dataset Sampling Location

• Location Name: Yellowstone National Park, Wyoming, USA
• Coordinates
  • Lat. (^o): 44.534
  • Long. (^o): -110.7978

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000642	Metagenome / Metatranscriptome	965	Y
F000855	Metagenome / Metatranscriptome	859	Y
F001381	Metagenome / Metatranscriptome	709	Y
F002229	Metagenome / Metatranscriptome	580	Y
F002372	Metagenome / Metatranscriptome	566	Y
F002795	Metagenome / Metatranscriptome	529	Y
F002978	Metagenome / Metatranscriptome	516	Y
F004024	Metagenome / Metatranscriptome	456	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209018_10048871	F004024	GAGG	VQSERDYVRQSPSLGDDDMMFLDARATLAAALARAVVGYSDNRVRALAWLAVATPRLYDRIAPIVESSAIRQSPGASRTLRDALRALSLEEYMRRRDERRSER
Ga0209018_100488711	F000855	GAGG	MDWLEDFWSKIVSWSDELSASLYNAVVEWVNAVVEIWNGWMDALLHPADALPSVPQLRWVVDWLSDIVDYTALMYMLVDYVAYAQVVQQALVAQLTIVSIGLGFRAWLVIRRIVLVS
Ga0209018_100488712	F001381	GAG	MHYVIAFAYVLFWLSLAALAARWLPLWALPVALVQLAAAYVMLRAWLLTVAGRGDGDGA
Ga0209018_100488713	F000642	N/A	MQVVSIALAVCAVIAALWYMRRREAGAGRVRGWLLIWDELAGWRALQASYADAGIVADGVTYPASLPVVRVGRDLVWIARCDSAALVEHQALERARESAALASLWRGGGQWLDFLRVAGVVLPAVFSYFTWSQVAALQALVAQILSLVGEGK
Ga0209018_100488714	F002978	GAGG	MGSSLRDWRVILRPWADRRLWFVQARRNGRVVWGVVYDAADPESVVLVRRAVATLRAAGADCSALPSVLPGAPGSPSGA
Ga0209018_10048873	F002229	GGAGG	MVTLLTVDGVEEIDYLPSDAEIRTSLDDCALYGILLHGVTWIRLSSGAGWWTIIGGRRVVATLGWCWFTDDGRGYWSPTLASVSSEACAMLGVEVEVDDGD
Ga0209018_10048874	F002795	GGAGG	MMATSGLTLCGMVASYREFASRRDGRTYRVITVFGDLVLDGVILCQVDGYDVFVDSPGYTRGEMVELPARLQFVRDSSGRPAVRLYVDEGVR
Ga0209018_10048875	F002372	AGGGGG	MPTRREDRLWATVHQRSMHLRALLDGLDMVDVDVTYELDYYPYAIVDLLLLRVDAPPLVLRSAYVHANRQWEYHSEWALRIIDAALLLVEEYRADPSAAGAVGV